Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31327g00003 ATGAATGCAAGCGAACCTAAATTTGTTCGGTTTGAAGACTGGAGGTCAACGTCATCGGAGCAAGAGAATTCTGTTAATAATGGATATAACAGAAGAAAAGGTATGCCAAGTGTAGGTGCTGTTTTGAAGAGTATTGGAAGGAAACTGGAGAATGGTTCAGAGAAGTTCAAGAACTTGAGGAAACCTTCAACTGTTCATCCTGTAAGTGACAGACCAAAAGAGAATCTGGCTTCTATAAGAAGCAAAATTCTTGATCCACAAGGACCACTCCTTCAGAAATGGAATAAGATTTTCGTGATTACATGCGTGATGGCAATCTCTGTGGATCCACTCTTCTTCTACATTCCAGTGATCAAGGACAGAGAGAAATGTCTGAAGATTGATGGCACATTGCGGATCACCACTAGTGTTCTTCGGACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACGGGTTTTATTGCCCCGTCTACTCGTGTTTTTGGAAGGGGTGAGGTGAATGATAATCCGGTGGCTATAGTGAAAAGATACTTAAGTTCATACTTCATCATTGACTTGCTCTCAGTTATTCCATTTCCACAGGTGCTAGTTTTAGCTGTGATTCCAAAGATGAAAAGCTCACCGTTTCTAGCAAAGGACTTGTTGAAGTATGTAATATTGGTCCAATATGTGCCAAGACTTCTACGGATATGGCCATTATTCAGAGAAGTAACCAGAACTTCTGGTATATTGACTGAGACTGCATGGGCTGGAGCTGTCTTTAATCTTGGTCTTTATATGCTAGCAAGTCATATTGTTGGAGCTAACTGGTATCTGCTTTCAGTAGAATCAGAGGTGAGATGCTGGCGCAAAGTGATGGAAAATAATACTCAGCATCACTTTAAAAAATCAGACCTGGGCTGTGGACCTGACAGAGCATTTGTCATATCACTTCTCACTAAAAATACTAGTTGCCCTTTCATTGACCCTGATCAGAACCCAGACCCAAATGCCTTTGATTTTGGAATATTCAATGATGCTTTACAATCATCCGTGGTACATTCTGAAACAGATTTTCTTAAGAAGTTTTTCTACTGCTTTTGGTGGGGTTTACGCAATTTGAGTTCTGTTGGACAAAACCTCAAGACAAGCACTTACGTTGTGGAGATACTCTTTGCCATCTTCATAGCCATTGCTGGATTGGTTTTATTCGCATTGCTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTAAGAGTTGAGGAGATGAGAGTCAAGAGGCGCGACGCAGAAAGGTGGATGTCTCATCGTATGCTGCCTGAGAGACTGAGGGACAGAGTTAGACGATATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCACCCTCCCTAAAGATCTGAGAAGGGACATAAGGCGTCATCTCTGCTTGGCCTTGGTTAAAAAAGTGGGTATTGTCCATAACTATTATGCTTCTTTAACCAACTAA 1509 0.4076 MNASEPKFVRFEDWRSTSSEQENSVNNGYNRRKGMPSVGAVLKSIGRKLENGSEKFKNLRKPSTVHPVSDRPKENLASIRSKILDPQGPLLQKWNKIFVITCVMAISVDPLFFYIPVIKDREKCLKIDGTLRITTSVLRTFFDLFYILRIIFQFRTGFIAPSTRVFGRGEVNDNPVAIVKRYLSSYFIIDLLSVIPFPQVLVLAVIPKMKSSPFLAKDLLKYVILVQYVPRLLRIWPLFREVTRTSGILTETAWAGAVFNLGLYMLASHIVGANWYLLSVESEVRCWRKVMENNTQHHFKKSDLGCGPDRAFVISLLTKNTSCPFIDPDQNPDPNAFDFGIFNDALQSSVVHSETDFLKKFFYCFWWGLRNLSSVGQNLKTSTYVVEILFAIFIAIAGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPERLRDRVRRYEQYKWQENRGVEEEALIRTLPKDLRRDIRRHLCLALVKKVGIVHNYYASLTN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31327g00003 502 Pfam Ion transport protein 94 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc31327g00003 502 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
Stsc31327g00003 502 Gene3D - 96 416 - -
Stsc31327g00003 502 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 495 - -
Stsc31327g00003 502 MobiDBLite consensus disorder prediction 12 32 - -
Stsc31327g00003 502 SUPERFAMILY cAMP-binding domain-like 421 494 IPR018490 -
Stsc31327g00003 502 Gene3D Helix hairpin bin 419 483 - -
Stsc31327g00003 502 SUPERFAMILY Voltage-gated potassium channels 85 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31327g00003 Stsc-Chr31327 4000 6059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31327g00003 1 490 Ion Channels AT5G53130 58.418 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31327g00003 K05391 - gmx:100797784 686.411