Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31327g00002 ATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAGAGCTACATTGTTCGCGAAGGAGATCCAGTTGATGAGATGCTCTTTGTAATGCGTGGAAAACTCGCCACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTACATGGTTCTCCAGGCTGGTGACTTCTGTGGAGAGGAGCTGCTAACATGGGCCCTGGATCCTCACTCCTCCACAAATCTTCCCACCTCAACCAGAACAGTAGAAACCATATCAGAAGTTGAAGCCTTCGCTCTCATGGCCGATGACTTGAAGTTTGTTGCATCCCAATTTCGACGGCTTCAGAACAAACAGCTCCAACACACTTTCAGGTACTATTCGATGCAATGGAAGACATGGGCTGCCTGTTTTATACAAGTAGCATGGCGTCGATACTGGAAAAAGAAGGTTGAGAGGCAATTACGTGAAGCAGAAGCCAACCTACAAGGTGCCTTTGTAAACGAAGATGAATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCCAGGTTTGCTGCTAACGCTTTGAGAAACTTGAGGGAAAACAGCGAACGCAACAAGAGAATGCCACAGAGACTACCTCTGCTTCCTCCAAAGCCTGCTGAGCCAGATTTCTCTACTCAGGAACACTAG 654 0.4664 MCDRLKPVLYTEKSYIVREGDPVDEMLFVMRGKLATMTTNGGRTGFFNYMVLQAGDFCGEELLTWALDPHSSTNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLQNKQLQHTFRYYSMQWKTWAACFIQVAWRRYWKKKVERQLREAEANLQGAFVNEDESSLSLGATIYASRFAANALRNLRENSERNKRMPQRLPLLPPKPAEPDFSTQEH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31327g00002 217 Gene3D Jelly Rolls 1 107 IPR014710 -
Stsc31327g00002 217 MobiDBLite consensus disorder prediction 189 217 - -
Stsc31327g00002 217 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 212 - -
Stsc31327g00002 217 Coils Coil 141 161 - -
Stsc31327g00002 217 ProSiteProfiles cAMP/cGMP binding motif profile. 1 73 IPR000595 -
Stsc31327g00002 217 Pfam Cyclic nucleotide-binding domain 9 99 IPR000595 -
Stsc31327g00002 217 SMART cnmp_10 1 120 IPR000595 -
Stsc31327g00002 217 FunFam Cyclic nucleotide-gated ion channel 1 1 105 - -
Stsc31327g00002 217 CDD CAP_ED 1 120 IPR000595 -
Stsc31327g00002 217 SUPERFAMILY cAMP-binding domain-like 1 108 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31327g00002 Stsc-Chr31327 2900 3954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31327g00002 1 216 Ion Channels AT5G53130 73.516 1.35e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31327g00002 K05391 - gmx:100797784 371.703