Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31324g00001 ATGTCACTCAAGCGAAGAAGGACCCACGCACCCAAGCCCGCCCTCGACGATGACGTCATCTGCGAGCGGTGCTCCTCCGGCGAGTCCCCGGCCGAGCTTCTCCTCTGCGACAAATGCGACCGTGGCTACCACCTCTTCTGTCTCCGTCCTATCCTTCCTTCTGTTCCCAAAGGCTCTTGGTTCTGCCCCTCTTGTTCCCACACAGCCGCCAAAAAACCAAAATCATTTCCACTCATTCAGACCAAAATCATTGACTTCTTTAGAATTAAACGGTCTTCGGAGGAAACGTTAACTTCAATTCAAGATGCTCGGAAGAAGCGGAAGCGGGGAAGCAGCTTGGTTGTGTCGAAAAAGAAGAGGAAGCTTCTTCCGTTCGTTCCGAGCGAGAATCCTAAGAGGAGGTTAGAGCAGATGGCGTCGCTGGCTACGGCACTGATTGCGACGAAAACGGTGTACAGCAATGAGCTTACTTACATTCCTGGTATGGCGCCAAGGTCTGCTAATTGTCCTGCTCTGGAGAGTGGTGGGATGCAGGTCTTGTCAAAAGAAGACACAGAAACGTTAAACTTATGCAGAACTATGATGCAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTTACTGTTGAGGCAGATAGATTCATAAGAGATTTGACAATAATCACAGAATATGTTGGAGACGTAGACTTTCTAGAGAATAGGGAAAGTGATGATGGGGATAGCATCATGACACTGCTTTCTGCTTCTAATCCTTCCCAAACGCTTGTCATCTGTCCAGATAAACGGAGCAATATAGCACGCTTCATTAATGGTATCAACAATCACACGCCGGAAGGAAAAAAGAAGCAGAACTTGAAGTGCGTGAGGTTTGATGTCAATGGTGAATGTCGGGTTCTTTTAATTGCTAACAGAGATATAACGAAAGGGGAAAGACTGTACTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTCTAA 1008 0.4663 MSLKRRRTHAPKPALDDDVICERCSSGESPAELLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSHTAAKKPKSFPLIQTKIIDFFRIKRSSEETLTSIQDARKKRKRGSSLVVSKKKRKLLPFVPSENPKRRLEQMASLATALIATKTVYSNELTYIPGMAPRSANCPALESGGMQVLSKEDTETLNLCRTMMQRGECPPLMVVFDPLEGFTVEADRFIRDLTIITEYVGDVDFLENRESDDGDSIMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDITKGERLYYDYNGYEHEYPTEHFV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31324g00001 335 CDD PHD_RSF1 21 65 - -
Stsc31324g00001 335 CDD SET_ATXR5_6-like 198 335 - -
Stsc31324g00001 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 84 IPR013083 -
Stsc31324g00001 335 SUPERFAMILY FYVE/PHD zinc finger 12 72 IPR011011 -
Stsc31324g00001 335 ProSiteProfiles SET domain profile. 201 323 IPR001214 GO:0005515
Stsc31324g00001 335 Pfam PHD-finger 20 66 IPR019787 -
Stsc31324g00001 335 FunFam Histone-lysine N-methyltransferase ATXR5 106 335 - -
Stsc31324g00001 335 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Stsc31324g00001 335 SMART PHD_3 20 66 IPR001965 -
Stsc31324g00001 335 Pfam SET domain 133 323 IPR001214 GO:0005515
Stsc31324g00001 335 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Stsc31324g00001 335 Gene3D SET domain 107 335 IPR046341 -
Stsc31324g00001 335 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 94 333 - -
Stsc31324g00001 335 SUPERFAMILY SET domain 191 323 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31324g00001 Stsc-Chr31324 1765 5632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31324g00001 10 84 C2H2 Transcription Factor Family AT3G01460 32.895 1.84e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc31324g00001 PHD 2.6e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31324g00001 K24406 - gmx:100775247 554.288