Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31318g00001 ATGGCGAAAACCAGACCGGGGAAAAGAGACTTGGACTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGTTGGTGACTGCGTTTTGATGCGTCCTTCGGACACAACTAAGCCACCGTATGTGGCGAGAGTGGAGAAGATCGAGTCGGATAGTAGGAACAACGTGAAGGTTCGTGTGAGATGGTACTATAGGCCTGAAGAGTCCATTGGTGGAAGGAGACAGTTCCATGGGGCCAAAGAGCTTTTCTTGTCTGATCATTATGACATTCAGAGTGCTCACACCATTGAAGGGAAGTGCGTTGTTCACTCCTTCAAGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTACTGTAGGTTTGAGTACAAGGCTGCCACCGGAGCTTTCACACCCGACCGCGTCGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGATGCAAGGATTGGTACCATCCTGCCTGTGTGGGAATGACTATTGAAGAAGCAAAGAAGTTGGATCACTTCGTTTGTTCTGAATGTTCATCTGATGACGACATGAAGAAACCCCAGGCTACATTTCCAGTGTCACCAGGATCTGACAGCAAGATGAATGAACATTTTCAGGTGGAGCCGAAGCGGCGGAAGAGATGA 669 0.4858 MAKTRPGKRDLDSYTIRGTNKIVRVGDCVLMRPSDTTKPPYVARVEKIESDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDSKMNEHFQVEPKRRKR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31318g00001 222 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Stsc31318g00001 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 198 IPR013083 -
Stsc31318g00001 222 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Stsc31318g00001 222 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Stsc31318g00001 222 PANTHER OS08G0421900 PROTEIN 1 208 - -
Stsc31318g00001 222 SMART BAH_4 21 136 IPR001025 GO:0003682
Stsc31318g00001 222 MobiDBLite consensus disorder prediction 187 222 - -
Stsc31318g00001 222 SMART PHD_3 140 187 IPR001965 -
Stsc31318g00001 222 CDD BAH_BAHCC1 22 156 - -
Stsc31318g00001 222 Gene3D - 2 134 IPR043151 -
Stsc31318g00001 222 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Stsc31318g00001 222 Pfam BAH domain 23 135 IPR001025 GO:0003682
Stsc31318g00001 222 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Stsc31318g00001 222 FunFam Chromatin remodeling protein EBS 1 132 - -
Stsc31318g00001 222 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31318g00001 Stsc-Chr31318 8748 12350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31318g00001 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 6.83e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc31318g00001 BAH 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31318g00001 K25868 - gmx:100800993 442.965