Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31301g00001 ATGGAGAGGGTTGTGGGAGGAAAGTACAAGATCGGTAAGAAAATTGGAAGCGGTTCCTTTGGTGAAATTTATATTGCTACAAATATTGAGACCTCTGAGATTGTGGCCGTCAAGATGGAGAACAAGAAGACCAAACATCCACAGCTGCTCTATGAGGCAAAGCTGTATAATCTTCTTCAAGGAGAAAGTGGTGTACCAAGTATGAAATGGTGTGGCATTGATGGAGACAATAATGTTCTGGTTATTGATCTTCTGGGACCGAGTCTTGAGGACCTTTTCGTCTATTGCGGGAGAAAATTTACGTTGAAAACGGTCTTGATGTTGGCTGATCAGATGCTTACAAGAATAGAGTACCTACATTCCAAGGGATATTTGCATAGAGACATTAAACCAGATAACTTCCTTATGGGCCTTGGGAGGAAAGCAACCCAGGTTTATATTATTGACTTTGGACTTGCAAAAAGATATAAAGACCTTAACACAAACAAACATATACCTTACAGAGAGAATAAAAACTTAACAGGAACTGCACGTTATGCAAGTTGTAATACTCACATAGGAATTGAGCAAAGTCGTCGGGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTCTTAAGGGGAAGCCTTCCCTGGCAGGGTCTGAAAGCTGTAACAAAAAAGGAAAAATATGACAGGATTTGTGAGAAGAAGTTGTCAACTCCCATTGAGATGCTTTGCAAGTCATATCCCGTGGAGTTCGCTTCTTACTTTCATTATTGCCACTCCTTGACATTTGATCAACTACCAGATTATGGATNNNNNNNNNNTCGTGATCTGTTCAATCGTGAAGGATATGATAATGACAATTTGTTTGACTGGACCATTCTAAAGTATCAGCAGACACAACAGAGACAGAGACAGATACAAAATCAATCGGCTGTTTCAGCCGCTGTGCCTAGCAGTCTAGAACCCATGGCTATGGACAAGAGTACAGGAGTCAATGATTCGGCTCGTGTAACTTCGACAAGACAGTTGGCGAATCAGACTCATGATCGTCCAAGTGCGACTGTACAACCTAAACCATCTACTGCTCACAATCATAGTTCCAAGAACCAGACTGAGAAACATAATGTGAGCAACGGTCCATCTACATCATCTGGCTTGCCAAAATCCTCTAAAGAAAATGTATCAAAAGAAAAACACTTAGGAAGCTCAAACATTGCTCGCGTTTTTGGTAGTAATTCTCGTACTTCAAGCAGTTGGATTCCTTCACTACGCCGAATTTCTTCAGCCAAATAA 1284 0.4058 MERVVGGKYKIGKKIGSGSFGEIYIATNIETSEIVAVKMENKKTKHPQLLYEAKLYNLLQGESGVPSMKWCGIDGDNNVLVIDLLGPSLEDLFVYCGRKFTLKTVLMLADQMLTRIEYLHSKGYLHRDIKPDNFLMGLGRKATQVYIIDFGLAKRYKDLNTNKHIPYRENKNLTGTARYASCNTHIGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDRICEKKLSTPIEMLCKSYPVEFASYFHYCHSLTFDQLPDYGXXXXRDLFNREGYDNDNLFDWTILKYQQTQQRQRQIQNQSAVSAAVPSSLEPMAMDKSTGVNDSARVTSTRQLANQTHDRPSATVQPKPSTAHNHSSKNQTEKHNVSNGPSTSSGLPKSSKENVSKEKHLGSSNIARVFGSNSRTSSSWIPSLRRISSAK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31301g00001 427 MobiDBLite consensus disorder prediction 328 387 - -
Stsc31301g00001 427 SUPERFAMILY Protein kinase-like (PK-like) 5 270 IPR011009 -
Stsc31301g00001 427 ProSiteProfiles Protein kinase domain profile. 9 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31301g00001 427 MobiDBLite consensus disorder prediction 302 427 - -
Stsc31301g00001 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc31301g00001 427 MobiDBLite consensus disorder prediction 402 427 - -
Stsc31301g00001 427 PANTHER CASEIN KINASE-RELATED 7 367 - -
Stsc31301g00001 427 Gene3D Transferase(Phosphotransferase) domain 1 1 342 - -
Stsc31301g00001 427 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc31301g00001 427 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31301g00001 427 SMART serkin_6 9 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31301g00001 427 FunFam CK1 family protein kinase 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31301g00001 Stsc-Chr31301 13385 18023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31301g00001 8 213 MAP Kinase Kinase Kinase AT3G06030 26.606 1.90e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc31301g00001 Pkinase 6.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31301g00001 K08960 - gmx:100792736 666.766