Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc312g00010 ATGAATTGTCTTCTAGTTTGTCAATCTCCATTGTGGATAGTGACCATTGTGTTCTACACGTGCATTTTGATCCCATTGATGCAACTCAAGAAGGCAGTGTTTGGTTGTTACATGGCTTTATTTTTCGGCTGTGAAATCACCAAAGGCATGTCCAAGGAGATTCAGTTCCCGGAAATTCCTTCTTTGCCTGTGGCCAGGTTCCAAGATTTGCAGTGTCTAAGAGAAGAAGAGAGTTCAGAGGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGCAAGCTAAGAAGATGTAGCCATATATTCCATCTCAGTTGCATTGAGCAATGGATTGAACGCAATCAATTCTCTTGCCCACTTTGTAGATCCTTTTTATTTTCTCATCATAATTAA 405 0.4074 MNCLLVCQSPLWIVTIVFYTCILIPLMQLKKAVFGCYMALFFGCEITKGMSKEIQFPEIPSLPVARFQDLQCLREEESSEETCSICLVEFEDEDAVSKLRRCSHIFHLSCIEQWIERNQFSCPLCRSFLFSHHN 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc312g00010 134 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Stsc312g00010 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 50 129 - -
Stsc312g00010 134 SMART ring_2 83 125 IPR001841 -
Stsc312g00010 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 129 IPR013083 -
Stsc312g00010 134 Pfam Ring finger domain 82 126 IPR001841 -
Stsc312g00010 134 SUPERFAMILY RING/U-box 73 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc312g00010 Stsc-Chr312 35584 36069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc312g00010 1 131 C3H Transcription Factor Family AT4G38140 40.458 1.06e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc312g00010 - - pvu:PHAVU_007G012000g 180.259