Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc312g00002 ATGAAAGCACCAACCAGTGAAAGAGAAGAAAGTGAGAAGAAGAAGAAGATGGCGAAGGGAAAGAACTCATCTCAAGGGAGTAAGAGAGTGGACGCCGTCGATTCTCGATCTTCGTCCGTTCTTGTTCGCGCCAAGGATGGCAGCGCTTTCACCAAATGCGACGAGTGCGAGAAAGATGTTCCCGTTGCGCTCATCAGCATGCATAGTTGCAGCCTCGAAGCCAAAATCAAAATGAATCTCGAGGCACAAGTTGTGGAACAGCCTTCTCAAGCTAAGAAATCAGAGAGGAAGAGGTCGAAATCTAGTGAACCAAAGGCTAAAAGATCTAAAGTTGAGAAGACGAAGAAGGAGAAAGATCCAAACAAGCCAAAGCGTCCTCCTACAGCATTCTTTGTCTTCATGGATGATTTTAGGAAAACTTTTAAGGAGGCAAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAAGAGGGCGGTGAGAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTTGGACAAAGCTGCCGAGCTTAAAGCAGAATATGGGAAGGCTATGGAGAGTTATAATGCTGCTGAAGCAGAAGGAGAAGAAGGAGGAGAAGATGGAGAGGGAGAGCATGAAGAGGGGGCAGATGACAAATCTGATAAGGAAGAAGCTGCTGCAGGTGAAGAGGAGGAGCTGACTGATGAGGAGTAA 705 0.4624 MKAPTSEREESEKKKKMAKGKNSSQGSKRVDAVDSRSSSVLVRAKDGSAFTKCDECEKDVPVALISMHSCSLEAKIKMNLEAQVVEQPSQAKKSERKRSKSSEPKAKRSKVEKTKKEKDPNKPKRPPTAFFVFMDDFRKTFKEANPDSKDVKRVGKEGGEKWRSMTDEEKKPYLDKAAELKAEYGKAMESYNAAEAEGEEGGEDGEGEHEEGADDKSDKEEAAAGEEEELTDEE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc312g00002 234 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 28 222 - -
Stsc312g00002 234 Gene3D High mobility group box domain 106 203 IPR036910 -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 90 124 - -
Stsc312g00002 234 FunFam high mobility group B protein 7 isoform X1 118 201 - -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 196 211 - -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 85 130 - -
Stsc312g00002 234 CDD HMG-box_AtHMGB1-like 124 184 - -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 142 169 - -
Stsc312g00002 234 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 123 192 IPR009071 -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 1 41 - -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 1 19 - -
Stsc312g00002 234 MobiDBLite consensus disorder prediction 188 234 - -
Stsc312g00002 234 SMART hmgende2 122 193 IPR009071 -
Stsc312g00002 234 Coils Coil 227 234 - -
Stsc312g00002 234 Coils Coil 177 197 - -
Stsc312g00002 234 Pfam HMG (high mobility group) box 123 192 IPR009071 -
Stsc312g00002 234 SUPERFAMILY HMG-box 109 192 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc312g00002 Stsc-Chr312 2408 3899 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc312g00002 HMG_box 1.3e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc312g00002 K25507 - gmx:100306558 244.202