Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31284g00002 ATGAGCATGTTCATGACGAGAGAGGCAGAGCAGCAGAAGCAGCAGCAGCAAGGAATAGGCATAGGCATGGACACGCAAAGCATAACGGGGATCTTCTCATTGAATGAAGCCCTTGATCCTCCAAAAACAAGAAATGATCTGGAAGGAATAGCTGCTATTGTTGGAGAACAAGTCCTGTTTGGGACCAAAAATGACCACAACAAAATCATGCACCATAATAACACGCCCAATGCTAAGAGGTACAGAGGTGTCAGGAAGAGGCCCTGGGGGAGGTGGTCCGCCGAGATACGCGACCGTATTGGCAGATGCCGCCACTGGCTTGGCACCTTCGACACGCCCGAGGAGGCGGCTCGTGCATACGATGCGGCCGCTAGGCGCCTCAGAGGCTCCAAAGCTCGAACGAACTTCCAGATAGCGCCCGTGTTGCCGGTTTCGGTGTCGTCGTCGTCGTCGAGTAGTAGTCGGAAGAGGAAAGGGAGGCGCGGTGGCGATAGCAAGTGTTCGGTGGTTACGTCAGTGGCACAATTGTTCAGTTCTGGGGTGCCTCATCCTCATCCATTAGGAAGCAGCGGCGAGGGTATGGGGAGTGTTGAGCTGGAGCTCAAGCTTGGTGTGAGGAGTGAGGATTGA 630 0.5444 MSMFMTREAEQQKQQQQGIGIGMDTQSITGIFSLNEALDPPKTRNDLEGIAAIVGEQVLFGTKNDHNKIMHHNNTPNAKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTPEEAARAYDAAARRLRGSKARTNFQIAPVLPVSVSSSSSSSSRKRKGRRGGDSKCSVVTSVAQLFSSGVPHPHPLGSSGEGMGSVELELKLGVRSED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31284g00002 209 MobiDBLite consensus disorder prediction 1 21 - -
Stsc31284g00002 209 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Stsc31284g00002 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 47 156 - -
Stsc31284g00002 209 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Stsc31284g00002 209 CDD AP2 79 139 IPR001471 GO:0003700|GO:0006355
Stsc31284g00002 209 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Stsc31284g00002 209 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Stsc31284g00002 209 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Stsc31284g00002 209 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Stsc31284g00002 209 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Stsc31284g00002 209 MobiDBLite consensus disorder prediction 144 209 - -
Stsc31284g00002 209 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31284g00002 Stsc-Chr31284 7977 8606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31284g00002 28 177 AP2-EREBP Transcription Factor Family AT1G80580 52.096 7.08e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc31284g00002 AP2 6.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31284g00002 - - aip:107614619 227.254