Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31258g00001 ATGGGAAGACGTCCATGCTGCTCGAAAGAGATAAACAAAGGAGCTTGGTCAAGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGTGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCTGGTTTGAAGAGGTGCGGGAAGAGTTGCAGACAGAGATGGTTGAATTATCTGAAGCCAGGCATTAAGAGAGGTGACATCTCTGAGGACGAAGAAGATATGATCATAAGGCTTCATCGTCTTCTCGGAAACAGATGGGCTTTGATAGCAAAGAGGTTGCCGGGACGAACAGACAATGAAATAAAGAATTATTGGAATACCAATCTCTCTAAGAAGCTACAAAATCAACAACAACCACCACCTCCTCCATCTTCATCTTCTTCCCACAAACACAAACACAATCATGTAATAGTAACACCCCAAGCTACAATGCCTAGAAGACCCAAAGCTGTTCATCACCACAACAAAATAATCTTCGACGACAACAACAATAACAATTCAATTAATTGCCCCTGCAGTGACAATGAAGAAGCTTCTCTCGCTGATTTCCTCATTGACATTGACGATGATGATCAAATGCTGTTGGCTAACCCAATCGAAGAACACAGCAACGATGATAATAACAACAAGGTGTTATTAGGGTTAAGAAAGAGTAGTCCAAGCTCATCATCATCAGATCAATGTAACAACAAGTTGTTATTGTCTGAGAAGTTTGATCCTTTGGAGACACTTTTGGATGTGGAGTTAAAGAGGATGGCTTCATTTCTTGGTCTAAAAAATTAA 789 0.4081 MGRRPCCSKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISEDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQNQQQPPPPPSSSSSHKHKHNHVIVTPQATMPRRPKAVHHHNKIIFDDNNNNNSINCPCSDNEEASLADFLIDIDDDDQMLLANPIEEHSNDDNNNKVLLGLRKSSPSSSSSDQCNNKLLLSEKFDPLETLLDVELKRMASFLGLKN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31258g00001 262 CDD SANT 70 111 IPR001005 -
Stsc31258g00001 262 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc31258g00001 262 MobiDBLite consensus disorder prediction 114 135 - -
Stsc31258g00001 262 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Stsc31258g00001 262 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc31258g00001 262 CDD SANT 15 60 IPR001005 -
Stsc31258g00001 262 FunFam MYB-related transcription factor 12 65 - -
Stsc31258g00001 262 Gene3D - 6 66 - -
Stsc31258g00001 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Stsc31258g00001 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Stsc31258g00001 262 MobiDBLite consensus disorder prediction 201 230 - -
Stsc31258g00001 262 MobiDBLite consensus disorder prediction 210 230 - -
Stsc31258g00001 262 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Stsc31258g00001 262 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc31258g00001 262 FunFam Transcription factor TT2 69 139 - -
Stsc31258g00001 262 Gene3D - 69 140 - -
Stsc31258g00001 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Stsc31258g00001 262 SMART sant 12 62 IPR001005 -
Stsc31258g00001 262 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31258g00001 Stsc-Chr31258 3287 5154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31258g00001 1 161 MYB Transcription Factor Family AT4G38620 51.176 4.11e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31258g00001 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31258g00001 K09422 - gmx:100101858 280.026