Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31247g00002 ATGGAGATGGACAGTAGTATCCTGGGTCTTCTCAAACTTAGGATTAGGAGAGGCATTAATCTCGCAGTTCGAGATACTCCTTCTAGTACAAGTGATCCTTACGTTATTGTCAACATTGGGGAACAGAAGCTAAAAACTAAGGTCGTTAAAGACACTACTAATCCAGAGTGGAATGAAGAACTGACTCTTAATGTTAAGGATATTAATACTCCAATAAATTTGGCGATTTACGACAAAGACACCTTCTCAAACGACGACAGAATGGGTGAGGCAATAATAGAACTGAGGCCATATCTTCAGTGCTTGGTGATGGGGTTGGAGAGGCTTCCAGATGGGTGTGTGGTGAAGAGGATTCAGCCAAATAGGGTTAACTGCCTTTCTGAAGAGAGCTGTTGCATTTGGCATGATGGGACTATAATCCAAGAGATGATCTTGAGATTGAAAAATGTTGAGTGTGGTGAAATTGTTTGTGAAATTGAGTGGATTGATGTACCAGGCTGTAAGGGCTTATCAGAGCTACGACCTTAG 528 0.4167 MEMDSSILGLLKLRIRRGINLAVRDTPSSTSDPYVIVNIGEQKLKTKVVKDTTNPEWNEELTLNVKDINTPINLAIYDKDTFSNDDRMGEAIIELRPYLQCLVMGLERLPDGCVVKRIQPNRVNCLSEESCCIWHDGTIIQEMILRLKNVECGEIVCEIEWIDVPGCKGLSELRP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31247g00002 175 Pfam C2 domain 10 97 IPR000008 -
Stsc31247g00002 175 PRINTS C2 domain signature 27 39 IPR000008 -
Stsc31247g00002 175 PRINTS C2 domain signature 51 64 IPR000008 -
Stsc31247g00002 175 PRINTS C2 domain signature 72 80 IPR000008 -
Stsc31247g00002 175 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Stsc31247g00002 175 Gene3D C2 domain 7 165 IPR035892 -
Stsc31247g00002 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 7 168 IPR044562 -
Stsc31247g00002 175 SMART C2_3c 10 107 IPR000008 -
Stsc31247g00002 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 163 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31247g00002 Stsc-Chr31247 7786 8938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31247g00002 43 171 C2H2 Transcription Factor Family AT1G70790 58.015 3.51e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31247g00002 - - cave:132177749 249.98