Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31245g00002 ATGGAAGAAGGGAAGAGAGAGAATAAGAAGAAGAAGAAGGAAGAAGCAGCATCCACTACTACTACTATGGCATTTTCCGATGAGATTCCGATCACAAACACAAACAGCATCACCACTTCTTATCCTTTCTCGAGCATCTTCGATATGATGCCACTTCCATTGATACCATCTTCTGATCAGAAAACTACTTGTTCCTTTTCTGCCAATGGCTTCATCGACTTGCTTGCTCTTCAAGACTACACTCCTTCTTTATTCGATTGGCTCCCTACAACCACAACCACCACCGCCTCCGCCGCACCCACGCCTCCTCCGCAGCAGCCTCTTCCGTCGCCGGCGAGCTCGAATGTTCCAGACTGTTCGGAGGTGTTGAACACTCCGGCATCACCAAACTCGTCGTCGATATCGTCGTCGTCGAACGAAGGCGGCGGCGGCGGCGTCGGCAGCAACAACGTGGAAGATCAAAACAAAGTTGTTGCGGATGATGAACATGAAGCAGAGGATGAGGATGCTGATGGTGATGCTGATGCACCCAAAGACAAGACTAAGAAACAGTTGAAAGCAAAGAAGAAGAACCAAAAGAAACAAAGGGAGCCACGGTTCGCGTTTATGACGAAGAGCGAAGTGGATCATTTAGACGATGGCTATAGATGGCGTAAGTACGGACAAAAAGCTGTCAAAAACAGCCCTTATCCAAGGAGCTACTATCGTTGCACCACTTCGGGATGTGGCGTTAAGAAGCGCGTGGAGCGTTCTTCCGATGATCCAAGCATTGTCGTGACCACATACGAAGGCCAGCACACTCACCCTTGTCCCGCTACCTCACGCGCCGCACTCGCCTTCATGCACGAGCCTTCCTTCACCACCATTGGATCTGGCCCCGCCGCCGCCGCTCTTTCTTCTCCTCATCATCACTTTCTCCACCAACACTTCCACCAACCCCCGCCGCCACCACCTCCTCCTTTGTTATATAACTCTAACTCCACTGCTGTTGAGAGCTTTGTGGTTCAGGATAATGGAGAAGGTAGTGCAGGTGCATCTTCTAATAGGTTGATGATGGATCAAGCTAATTTCTTGAGAGACAATGGGCTTCTTCAGGACATTATTGTTCCTTCTCAGATCAGGAACAATAACATCCAATGA 1140 0.4956 MEEGKRENKKKKKEEAASTTTTMAFSDEIPITNTNSITTSYPFSSIFDMMPLPLIPSSDQKTTCSFSANGFIDLLALQDYTPSLFDWLPTTTTTTASAAPTPPPQQPLPSPASSNVPDCSEVLNTPASPNSSSISSSSNEGGGGGVGSNNVEDQNKVVADDEHEAEDEDADGDADAPKDKTKKQLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTSGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPATSRAALAFMHEPSFTTIGSGPAAAALSSPHHHFLHQHFHQPPPPPPPPLLYNSNSTAVESFVVQDNGEGSAGASSNRLMMDQANFLRDNGLLQDIIVPSQIRNNNIQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31245g00002 379 SMART WRKY_cls 211 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc31245g00002 379 Pfam WRKY DNA -binding domain 212 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc31245g00002 379 FunFam WRKY transcription factor 57 197 271 - -
Stsc31245g00002 379 MobiDBLite consensus disorder prediction 1 17 - -
Stsc31245g00002 379 ProSiteProfiles WRKY domain profile. 206 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc31245g00002 379 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 115 299 IPR044810 GO:0003700
Stsc31245g00002 379 Gene3D WRKY domain 196 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc31245g00002 379 MobiDBLite consensus disorder prediction 94 200 - -
Stsc31245g00002 379 MobiDBLite consensus disorder prediction 112 154 - -
Stsc31245g00002 379 MobiDBLite consensus disorder prediction 1 24 - -
Stsc31245g00002 379 SUPERFAMILY WRKY DNA-binding domain 203 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31245g00002 Stsc-Chr31245 18360 20162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31245g00002 181 378 WRKY Transcription Factor Family AT5G49520 55.556 1.09e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc31245g00002 WRKY 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31245g00002 - - gmx:100788697 278.87