Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31225g00002 ATGGAAAGTAGTGGAGATGAAGAAAACAATAACAATAACAACAGAACAAGCACGAGTTCATCATGTTCATCAGAAGAGTTAGAATTAGGAGGAAAGAAGAAGAGGGAGAGGGAGAGGGAGAGTGAGAAGCACGCGACATACAGGGGCGTGAGGATGAGGAATTGGGGGAAGTGGGTGTCAGAGATAAGGCAGCCAAGAAAGAAAACAAGAATATGGCTGGGCACGTACCCGACTGCCGAAATGGCGGCAAGAGCGCATGACGTGGCAGCCATTGCCATCAAAGGCGATTCCGCCTTCCTCAACTTCCCTCACCTCGCCGGACTCCTTCCCAGGCCGGCAACTACTTCTCCCAAAGACATCCAGCTCGCTGCTGCCATCGCCGCCAACGACACCGCCTTCAAGTTTCATCATCACCATGATAGTAAACCTAATCAGCAACCACCTTCTTCTTCTTCTTCATCTTCTTCCTCTTCTAGCAATGATGAATCATCGTCCCAAGAACAAGATGAGACGTTGTTTGATTTGCCAGATCTTTTTCCTGCTGATGATGGACTCTGCTCCTATCCTTCATCATCTTCATGGCATTTCCGCATTGAGGATCCCTTGTTATTTTTCTCTTTGGATAACTACTAG 633 0.4787 MESSGDEENNNNNNRTSTSSSCSSEELELGGKKKRERERESEKHATYRGVRMRNWGKWVSEIRQPRKKTRIWLGTYPTAEMAARAHDVAAIAIKGDSAFLNFPHLAGLLPRPATTSPKDIQLAAAIAANDTAFKFHHHHDSKPNQQPPSSSSSSSSSSSNDESSSQEQDETLFDLPDLFPADDGLCSYPSSSSWHFRIEDPLLFFSLDNY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31225g00002 210 MobiDBLite consensus disorder prediction 136 171 - -
Stsc31225g00002 210 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Stsc31225g00002 210 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Stsc31225g00002 210 MobiDBLite consensus disorder prediction 1 26 - -
Stsc31225g00002 210 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Stsc31225g00002 210 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 MobiDBLite consensus disorder prediction 1 45 - -
Stsc31225g00002 210 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Stsc31225g00002 210 MobiDBLite consensus disorder prediction 27 45 - -
Stsc31225g00002 210 MobiDBLite consensus disorder prediction 144 171 - -
Stsc31225g00002 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31225g00002 Stsc-Chr31225 15365 16215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31225g00002 34 204 AP2-EREBP Transcription Factor Family AT2G44940 48.113 2.98e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc31225g00002 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31225g00002 - - ahf:112726739 244.588