Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc311g00007 ATGGCGCTGATCTCTCACAGCGTTACTATTGTCTTTTTCCTGCTCGTCATGGCGAGTTACCGAGTTGACTCGGAGCCAACTCAGGACAAAGAAGCCCTCCTTGCTTTCATCTCGAAAACAAAACACCAGAGTCGAATCCAATGGAACGCCTCCGACTCCGCCTGCAACTGGGTTGGGGTTCAATGCGACTCCTCCAACTCTTACGTCTACTCTCTTCGCCTCCCTGCCGTTGGACTAGTGGGACCCATCCCTCCCGACACCATAGGCCGCCTCACCAACCTCCGTGTCCTCAGCCTCCGCTCCAACGGCCTCACCGGCCAGATCCCCTCTGATTTCTCCAACCTCGCCTTCCTCCGCGGCCTCTACCTCCAGAAGAATGAGTTCTCCGGCGAGTTTCCTTCCTCCGCAACTCGCCTAACTCGCTTGACTCGTTTGGATCTCTCCTCTAACAACTTCACAGGCTCCATTCCGTTCTCCGTCAACAACCTCACTCACCTCACCGGTCTCTTTCTCCAGAACAACAGCTTCTCCGGCACACTTCCCAGTATAACTGCCAAATTGAACGACTTCAACGTCTCCAACAACAATCTCAACGGTTCCATCCCCAAAACACTCACAAAATTTCCCAAATCATCTTTCGCCGGAAACATAGATCTCTGCGGCGGACCTTTACCGCCCTGCAGCCCGTTCTTCCCAGCGCCTGCGCCGTCGCCGGGAGAAGCTCCACCTGGAAAGCCTCTTCACAAGAAATCAAACAAACTATCCACCGGCGCCATTGTCGGAATTGTCATCGGCTCCGTCCTCGGCTTGCTGCTTCTGCTTCTACTACTCTTCCTGTGTCTGAGAAAGAGGCAGCGGCGGCAACCTGCAAAACCTCCGAAACCGGTGGTTCCTGTTGCAGCACGTGGCGTTCCGGCGGAGGCGGGAACTTCGTCGTCGAAGGAGGACATAACGGGAGGGTCAGCGGAAGCAGAGAGGAACAAATTGGTGTTCTTCGAGGGAGGAGTGTACAGCTTTGACTTGGAGGATCTGCTTCGTGCGTCGGCGGAGGTTCTTGGAAAAGGTAGCGTAGGTACGTCGTACAAGGCGGTGCTGGAGGAAGGGACCACGGTGGTTGTGAAGAGGCTGAAGGACGTAGTTGTTAGTAAGAAAGAGTTCGAGATGCAAATGGAGGTTCTTGGGAAGATCAAACACGATAATGTGGTTCCTCTCCGAGCTTTCTATTACTCCAAAGATGAGAAGTTGCTCGTTTACGATTACATCCCCGCCGGCAGCCTCTCTGCTCTTCTCCACGGGAGCAGAGTGTCTGGGAGAACACCGTTAGACTGGGACAACAGAATGAAGATTGCACTAGGAGCAGCAAGAGGCCTAGCATGCCTCCACGTGTCAGGCAAAGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTACGCGGTCCGGACCACGAAGCCGCCGTCTCCGACTTCGGCCTCAACCCATTGTTCGGAAACGGTGGCCCCTCGAACCGCATCGCGGGGTACCGGGCGCCGGAGGTGGTAGAAACCCGAAAGGCGACCTTCAAGTCTGATGTGTACAGCTTTGGAGTGTTGCTGTTGGAGCTATTAACAGGGAAAGCACCAAACCAAGCGTCGCTTGGGGAAGAAGGCATCGATCTGCCACGGTGGGTACAATCGGTGGTCCGGGAGGAGTGGACGGCGGAGGTGTTCGATGCGGAGCTGATGAGGTTCCATAACATAGAGGAAGAGATGGTTCAGCTGTTGCAAATTGCAATGGCTTGTGTGTCAGTTGTGCCGGACCAAAGGCCCAACATGCAAGACGTGGTTCGCATGATTGAGGAGATGAACCGTGGGGAGACCGATGAGGGTTTGAGACAGTCGTCAGATGACCCTTCTAAAGGATCCGAGGGTCATACTCCACCCCAGGAGAGTAGAACCCCACCCAGATCGGTCACACCGTAA 1962 0.5484 MALISHSVTIVFFLLVMASYRVDSEPTQDKEALLAFISKTKHQSRIQWNASDSACNWVGVQCDSSNSYVYSLRLPAVGLVGPIPPDTIGRLTNLRVLSLRSNGLTGQIPSDFSNLAFLRGLYLQKNEFSGEFPSSATRLTRLTRLDLSSNNFTGSIPFSVNNLTHLTGLFLQNNSFSGTLPSITAKLNDFNVSNNNLNGSIPKTLTKFPKSSFAGNIDLCGGPLPPCSPFFPAPAPSPGEAPPGKPLHKKSNKLSTGAIVGIVIGSVLGLLLLLLLLFLCLRKRQRRQPAKPPKPVVPVAARGVPAEAGTSSSKEDITGGSAEAERNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVSKKEFEMQMEVLGKIKHDNVVPLRAFYYSKDEKLLVYDYIPAGSLSALLHGSRVSGRTPLDWDNRMKIALGAARGLACLHVSGKVVHGNIKSSNILLRGPDHEAAVSDFGLNPLFGNGGPSNRIAGYRAPEVVETRKATFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPNMQDVVRMIEEMNRGETDEGLRQSSDDPSKGSEGHTPPQESRTPPRSVTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc311g00007 653 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Stsc311g00007 653 Gene3D Ribonuclease Inhibitor 187 228 IPR032675 -
Stsc311g00007 653 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 626 - -
Stsc311g00007 653 Gene3D Phosphorylase Kinase; domain 1 313 420 - -
Stsc311g00007 653 PANTHER OS05G0588300 PROTEIN 9 628 - -
Stsc311g00007 653 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Stsc311g00007 653 MobiDBLite consensus disorder prediction 615 632 - -
Stsc311g00007 653 ProSiteProfiles Protein kinase domain profile. 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc311g00007 653 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Stsc311g00007 653 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Stsc311g00007 653 SUPERFAMILY L domain-like 49 208 - -
Stsc311g00007 653 SUPERFAMILY Protein kinase-like (PK-like) 350 613 IPR011009 -
Stsc311g00007 653 MobiDBLite consensus disorder prediction 615 653 - -
Stsc311g00007 653 CDD STKc_IRAK 352 615 - -
Stsc311g00007 653 Pfam Protein kinase domain 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc311g00007 653 MobiDBLite consensus disorder prediction 633 653 - -
Stsc311g00007 653 FunFam pollen receptor-like kinase 1 315 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc311g00007 Stsc-Chr311 25273 29031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc311g00007 8 633 Receptor kinase-like Gene Family AT5G58300 54.403 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc311g00007 Pkinase 2.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc311g00007 - - gmx:100806857 952.199