Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31179g00001 ATGGAGCACAATCCTCGCTACATAATACACAAGAACCTCAAGAACTTGCTGCCAGGAGAACTTAGAAAAGAATATGAAGAAAATGAATCAAAGATGAATAGCATAGGATGGAAGAAAACCGGTGTATTGGGAGCAGGTTCTTATGGCACTGTTTATATTGCTACTGTTGTTGATATGCAAACTCGGTATAAAAGAGTTTTAAAGATAATTGCTGTCAAGACCTCATCAAAGCCCACATTGGCATTCTCTTTGAAGAAAGAAGAACAAATTTTGCAATCATTTAGTGGCTGTCAAGAAATCGTTCAATGCTTTGGGAGTGAGATCACCGTAGAAGGTGGAATTCCTCTTTATAATCTATTTTTGGAGTATGCTTCTTATGGTTCTTTGGCGGACTTGATCCACAAAAAACCTCTTCCGGAGAGCGAAGTGAGAATCTACACGCGTATGATTGTTAAAGGGCTTTCTCGTATTCATCGTGAAGGAATTGCCCATTGCGACCTTAAACCGGACAACATTCTTTTGTTCCGTCCATCCTTGGAACAAAAAAGCGTAAAATTTCAATTGAAAATTGCAGATTTTGGATTGTCTAAGACAAAAGACGAGGTAACAGATATTGAATTTTGGAAGTCTAGGCCTAGAGGGACATTATCTTACTTGTCGCCGGAGGCGTTTTCCGGATACATTGATGCTCCGATGGATATATGGGCACTTGGTTGCACAGTTCTTGAAATGCTCACTGGATTGCCTGCATGGGGTGTGAGGTTTACGCCTAATTACAAGAATTTAAAGTTCTTGGTTGGGTCTCTTAAGAATTCCCCAAAACCGCCGAATGGACTAAGTCTTGTTTGCTTTGATTTTCTTGGAAAGTGCTTTGAGAAGGACCCTAGCAAGAGGTGGACTGCTGACATGCTTCTTCATCATCATCCTTTCATTTCTACTTTGATTTCGCTCTATTAG 957 0.4023 MEHNPRYIIHKNLKNLLPGELRKEYEENESKMNSIGWKKTGVLGAGSYGTVYIATVVDMQTRYKRVLKIIAVKTSSKPTLAFSLKKEEQILQSFSGCQEIVQCFGSEITVEGGIPLYNLFLEYASYGSLADLIHKKPLPESEVRIYTRMIVKGLSRIHREGIAHCDLKPDNILLFRPSLEQKSVKFQLKIADFGLSKTKDEVTDIEFWKSRPRGTLSYLSPEAFSGYIDAPMDIWALGCTVLEMLTGLPAWGVRFTPNYKNLKFLVGSLKNSPKPPNGLSLVCFDFLGKCFEKDPSKRWTADMLLHHHPFISTLISLY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31179g00001 318 SMART serkin_6 37 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31179g00001 318 Gene3D Transferase(Phosphotransferase) domain 1 31 316 - -
Stsc31179g00001 318 Pfam Protein kinase domain 38 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31179g00001 318 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 30 311 - -
Stsc31179g00001 318 ProSiteProfiles Protein kinase domain profile. 37 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31179g00001 318 ProSitePatterns Protein kinases ATP-binding region signature. 43 73 IPR017441 GO:0005524
Stsc31179g00001 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Stsc31179g00001 318 SUPERFAMILY Protein kinase-like (PK-like) 37 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31179g00001 Stsc-Chr31179 1508 2807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31179g00001 37 313 MAP Kinase Kinase Kinase AT4G36950 42.199 1.34e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc31179g00001 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31179g00001 - - aip:107647747 362.073