Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31148g00002 ATGGCGCCACTAACCTTGGCTATGCATGTACCCTTGAGTTCAGAGACAGATAAGATTGCATTGCTTGCTTTGAAGGACAAGCTTACCAATGGTGACCCTCATGCTCTACCATCATGGAATCACTCTCTCTATTTAAAGAGGTTGCAGCTTCTTAACTTGAGCCAGAATAATCTTCATGGTCAGATTCCTACAAAGATGATAAACTGTTCAAGACTTATGGCAATTAAATTGCTATACAATAATCTTACTGGTAGAGTTCCTTCATGGTTCGGTTCTATGATACAACTTACTAATCTGTTGCTTGGAGTCAACCATTTTGTTGGTAGTATCCCAGCTTCTTTGGGAAATCTTTCATCGCTTCAAGAGTTGTCATTTGCATACAATCACTTGGAAGGAAGTGTAACTCCAGCTTTGGGTAGGTTGTCAAATTTGGAATTTTTGTCTTTGGGTATAAACAACTTTTCTGGCCATATCCCTCCTTCACTTTACAACCTATCAAATATTCAATTTCTTACAATCACTGAAAACCAGTTAGAAGGTACTCTTCTCATGAATATACCAATGGCATTTCCGAATCTTCTGGCACTTCAGTGCGGAATGAACCGATTTATTGGTACTTTCCCATCTTCAATCTCCAACCTTTCCAAATTACAAGTATTCGGAAGTGGAAGGGCTGATGATTTGGATTTTCTTTCCTCCTTAGAGAATTGTACTCAGATGCAAAAGCTTGCCATTGAAAGCAATTACTTAGGTGGTGTATTGACAGAACTCAAAGCCAACTTATCAAGCAATCTTGTTATGCTTACTATGGGGTCCAATCAAATTTCTGGAAGAATACCTGAAGGAATTGGAAAACTAATCAACCTAGAATTACTTAGCATGGAGGGAAATTCTCTTGAGGGAGAAATTCCATATTCAATTGGAAAGCTAAAGAATCTGGTACAGTTGACATTGGAGGGAAATAAGTTGTTTGGCAACATTCCTCTTGTCATTGGTAGCCTTACTATGTTGTCTAAAGTTGATCTGAGCAATAATAAATTTGAAGGATTCATTCCTTTTACACTAGGAAATTGCAACAAGATGGAGAGATTTTATGGTAATAATAACTGCTTAAGTGGTAATATACCCACTCAAATATTCAGCTACCAGCAAAGTTTAATAGTGTTGTCCTTATATTCCAACTCATTTACTGGTCCCATTCCTTTTGATCTTGGCAACTTGAATTATCTATCCACCTTGAATTTAGAAGGAAACAATTTAATGGGTGAGATTCCCATAGGACTTAGTGCTTGCTCTGCGTTAACAGAGCTCGCACTAGGAACAAACTTGTTTCATGGAAGTATATCTTCATTCTTGGGATCTCTACTATCCTTTGAAATCTTAGACCTTTTTAATAACAATTTCTCAAGTACAATTCCACATGAACTTGCGAATCTCACGTTGTTGAATACTTTGAACTTATCATTCAACAATCTCTATGGTGAAGTCCCGATAAGAGGGGTATTTAAAAACATTACAGCAATATCACTCAACGGAAACAAACATCTTTGTGGTGTGATACCTCAATTGAATCTTCCTCCATATCCCGCGTTGCCTTTACAGAAGAAACACAAAAGATCTATTAAGAAGAGAGTCGTCCTCGCCATTGCATTTGGAGGAGGAACCCTTGTCCACTTTGAGAGACCTAATGCTGTGAAAGTGTTGAATCTTGAAACACATGGGGCATTGAAGAGTTTACTAGTCGAATGCGGAGCACTAGGAAAAATCAAGCACAGAAACCTTCTCAGCATACTCACTTGTTGTTCAAGTGTTGACTACAAAGGGAATGATTTCAAGGCTATAGTGTTCGACTTCATGTCTAATGGGAGTCTAGAAACATTGTTGCACAACATACTGAAGATAGCGAGGGAAGCTATAGTTCACTATGATGTTAAGCCAAGCAATGTTCTACTTGATGATGATATGGTTGACTTTGGATTAGCTAGACTCGTTCATGGTGCTGCAAGCCGTTCTAGAAGTGGTCAAGCTAGCTCCTCTGCAATTAAGAGAACCATTGGATATATTCCACCAG 2071 0.3839 MAPLTLAMHVPLSSETDKIALLALKDKLTNGDPHALPSWNHSLYLKRLQLLNLSQNNLHGQIPTKMINCSRLMAIKLLYNNLTGRVPSWFGSMIQLTNLLLGVNHFVGSIPASLGNLSSLQELSFAYNHLEGSVTPALGRLSNLEFLSLGINNFSGHIPPSLYNLSNIQFLTITENQLEGTLLMNIPMAFPNLLALQCGMNRFIGTFPSSISNLSKLQVFGSGRADDLDFLSSLENCTQMQKLAIESNYLGGVLTELKANLSSNLVMLTMGSNQISGRIPEGIGKLINLELLSMEGNSLEGEIPYSIGKLKNLVQLTLEGNKLFGNIPLVIGSLTMLSKVDLSNNKFEGFIPFTLGNCNKMERFYGNNNCLSGNIPTQIFSYQQSLIVLSLYSNSFTGPIPFDLGNLNYLSTLNLEGNNLMGEIPIGLSACSALTELALGTNLFHGSISSFLGSLLSFEILDLFNNNFSSTIPHELANLTLLNTLNLSFNNLYGEVPIRGVFKNITAISLNGNKHLCGVIPQLNLPPYPALPLQKKHKRSIKKRVVLAIAFGGGTLVHFERPNAVKVLNLETHGALKSLLVECGALGKIKHRNLLSILTCCSSVDYKGNDFKAIVFDFMSNGSLETLLHNILKIAREAIVHYDVKPSNVLLDDDMVDFGLARLVHGAASRSRSGQASSSAIKRTIGYIPP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31148g00002 690 Gene3D Ribonuclease Inhibitor 225 314 IPR032675 -
Stsc31148g00002 690 Gene3D Transferase(Phosphotransferase) domain 1 552 690 - -
Stsc31148g00002 690 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 36 222 - -
Stsc31148g00002 690 Gene3D Ribonuclease Inhibitor 13 132 IPR032675 -
Stsc31148g00002 690 Gene3D Ribonuclease Inhibitor 384 525 IPR032675 -
Stsc31148g00002 690 SUPERFAMILY Protein kinase-like (PK-like) 559 690 IPR011009 -
Stsc31148g00002 690 SMART LRR_typ_2 286 310 IPR003591 -
Stsc31148g00002 690 SMART LRR_typ_2 407 431 IPR003591 -
Stsc31148g00002 690 SMART LRR_typ_2 479 504 IPR003591 -
Stsc31148g00002 690 SMART LRR_typ_2 141 165 IPR003591 -
Stsc31148g00002 690 SMART LRR_typ_2 334 357 IPR003591 -
Stsc31148g00002 690 SMART LRR_typ_2 45 69 IPR003591 -
Stsc31148g00002 690 Gene3D Ribonuclease Inhibitor 133 224 IPR032675 -
Stsc31148g00002 690 SUPERFAMILY RNI-like 42 321 - -
Stsc31148g00002 690 PANTHER OS04G0122200 PROTEIN 139 551 - -
Stsc31148g00002 690 SUPERFAMILY L domain-like 262 518 - -
Stsc31148g00002 690 FunFam LRR receptor-like serine/threonine-protein kinase EFR 226 532 - -
Stsc31148g00002 690 ProSiteProfiles Protein kinase domain profile. 487 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31148g00002 690 Gene3D Ribonuclease Inhibitor 315 383 IPR032675 -
Stsc31148g00002 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31148g00002 Stsc-Chr31148 19387 21819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31148g00002 45 690 Receptor kinase-like Gene Family AT3G47570 37.132 3.59e-139 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc31148g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31148g00002 - - ahf:112766919 758.444