Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31144g00001 ATGGAGGATTCAGGGAGTTCAAGGTGGAACCCTACAAAGGAGCAGATAAGCATATTGGAGAATCTTTATAGGCAGGGAATAAGAACACCAAGTGCTGAGGAGATTCAGCAGATAACAACAAGGTTGAGAGCTTTTGGTCACATTGAAGGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCCAGACAGAGGCAGAAGCAAAAGCAACACACTCTCGCTTACTTCAATCGCTGCTTTCTCCATCATCATCAACCCCCTTTTGCCCCAAACAATGTTATGTGTGGTCCATATTCACCAGAATACGCTCATGAACAAGCACAAGTTGTTGTTCCAGTAGGTATGATAAGGAGAATAATGCCAGGCAACGAGAAAGTTGTAACAATGTGCAACAATAACATGGAAGAAGAAAAAGAAGAAGAAGGAAAATTTGATTACTATGGGCTTGGCTTTAATAAACAGTTAGATAATAAAACGTTGGATCTTTTCCCTTTGCACCCAACTGGCATCTTGGAAGAGAAAAAAGAAGCACAACAAAACAACAACAACAAGAATGCTATGACCATGAAGTGCTCTTTCATGGCTTCTTCAACATCATCATCATCACTTTCCACTGATACTACTTTTTCTTATTCTCCTCATCATGATGATGGACAAGGACAAAAACAACCCTTCTTTGATTTCTTCGTCACTTCTGGACAAGGACATGGACAAGAACAAGCCTCATTTGAGAGCGGTTAA 741 0.4022 MEDSGSSRWNPTKEQISILENLYRQGIRTPSAEEIQQITTRLRAFGHIEGKNVFYWFQNHKARQRQKQKQHTLAYFNRCFLHHHQPPFAPNNVMCGPYSPEYAHEQAQVVVPVGMIRRIMPGNEKVVTMCNNNMEEEKEEEGKFDYYGLGFNKQLDNKTLDLFPLHPTGILEEKKEAQQNNNNKNAMTMKCSFMASSTSSSSLSTDTTFSYSPHHDDGQGQKQPFFDFFVTSGQGHGQEQASFESG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31144g00001 246 CDD homeodomain 8 68 IPR001356 GO:0003677
Stsc31144g00001 246 SUPERFAMILY Homeodomain-like 5 73 IPR009057 -
Stsc31144g00001 246 FunFam WUSCHEL-related homeobox 4 6 73 - -
Stsc31144g00001 246 MobiDBLite consensus disorder prediction 199 217 - -
Stsc31144g00001 246 Gene3D - 6 86 - -
Stsc31144g00001 246 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Stsc31144g00001 246 SMART HOX_1 4 71 IPR001356 GO:0003677
Stsc31144g00001 246 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 196 IPR044555 GO:0003700|GO:0099402
Stsc31144g00001 246 MobiDBLite consensus disorder prediction 199 225 - -
Stsc31144g00001 246 Pfam Homeodomain 7 66 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31144g00001 Stsc-Chr31144 5885 6798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31144g00001 4 229 Wox Gene Family AT5G59340 40.541 4.12e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc31144g00001 Homeodomain 3.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31144g00001 - - ahf:112736626 248.825