Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31139g00002 ATGCCAGGAAAAGCTGAATCCGATGAGTGGCGGGCGAAGCGAAGTGAGCAGATTCAGTTTCAAGCTGGTGTTTATGCTCAGCCGTGGTGGCGCGGCGGCAGCGAAGCCGGGGAGAATGCCCCAAAATCATCATTAGCAGATCAGCAGCTGAATGGTGGTGTGACAGTCACAACAGAAGCAGAGAACAATGAAGTTGTTGCTTTCAATAAAGAGATGCAGTCTTTGATTTCTCCATCACTACCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAACACCAGAACATCAAACATGTTTTTTCCTCAACCCCATTTACCATGGGCAAACACCTTGGTCCGAATTCCGAGACTGAAAGTGTTGGTCATTCAGTTATTCTAACGCCGCATCCTTATTTTGATGCCCAATATGGTGGAGGCTTGGCACCCTATGGCCAACAAACTATGATAAACCCTCAGCTGTATGGATTGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAACCGGTTTACGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATCAAAGTTAGGAAGCCATATCTTCACGAATCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGCCGCTTTCTCAATACAAAGAAGCTTGAAGGCAACAACAACAATGCAAATCCCTCAATGGAATCTGGAAGCTCGCTTTCCGCAGCTCGTTTACATTCCAACAATGATCACTATGATGCATCGCGGTCCACGGTTCAGGACATCGGAAAAATGCAGAATTTCACCATTGGTTTCCATGGTAGCAACGATCGGTCCTCAATGTATCATTCACAGTTGAATGGAAGAAATGAGGTACATTACTTTGATAGAGAGAGGCAAAGCATGGTTATGCATGGAGCCCCAAATGGGGCTCTTGACTAA 969 0.4582 MPGKAESDEWRAKRSEQIQFQAGVYAQPWWRGGSEAGENAPKSSLADQQLNGGVTVTTEAENNEVVAFNKEMQSLISPSLPGIDNSGGDVTKEHQNIKHVFSSTPFTMGKHLGPNSETESVGHSVILTPHPYFDAQYGGGLAPYGQQTMINPQLYGLNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNNANPSMESGSSLSAARLHSNNDHYDASRSTVQDIGKMQNFTIGFHGSNDRSSMYHSQLNGRNEVHYFDRERQSMVMHGAPNGALD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31139g00002 322 ProSiteProfiles NF-YA/HAP2 family profile. 169 229 IPR001289 GO:0003700|GO:0006355
Stsc31139g00002 322 ProSitePatterns NF-YA/HAP2 subunit signature. 174 194 IPR018362 GO:0003677|GO:0016602
Stsc31139g00002 322 Gene3D - 169 230 - -
Stsc31139g00002 322 SMART cbf3 168 229 IPR001289 GO:0003700|GO:0006355
Stsc31139g00002 322 PRINTS CCAAT-binding transcription factor subunit B signature 203 226 IPR001289 GO:0003700|GO:0006355
Stsc31139g00002 322 PRINTS CCAAT-binding transcription factor subunit B signature 172 194 IPR001289 GO:0003700|GO:0006355
Stsc31139g00002 322 MobiDBLite consensus disorder prediction 224 248 - -
Stsc31139g00002 322 MobiDBLite consensus disorder prediction 229 248 - -
Stsc31139g00002 322 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 56 275 IPR001289 GO:0003700|GO:0006355
Stsc31139g00002 322 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 171 226 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31139g00002 Stsc-Chr31139 12998 18190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31139g00002 21 252 CCAAT-HAP2 Transcription Factor Family AT5G12840 38.115 1.82e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc31139g00002 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31139g00002 K08064 - gmx:100782085 340.887