Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31131g00001 ATGGAGGAGTGCCAGTGCCACACGGTGTTTGGCAAGTATGAAATGGGGAGGCTTCTCGGGAAAGGCACGTTCGCCAAGGTGTACTACGGAAAGCAAATAGCCACGGGTGAAAGCGTGGCGATTAAGGTGATCAACAAGGAACAGGTGAAGAGAGAAGGCATGATGGAACAGATCAAGCGCGAGATTTCTGTGATGGCCCTTGTCAAGCACCCTAACATCGTTGAGCTGAAGGAGGTCATGGCCACCAAGACCAAGATCTTCTTCGTCATGGAGTACGTTCGCGGCGGTGAACTCTTTGCTAAGATCTCCAAAGGAAAGCTCAAAGAAGATCTCGCCAGAAAGTACTTCCGGCAATTGATAAGCGCCATTGATTTCTGCCACAGCAGAGGCGTTTCTCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGACGATGAGAATCTTAAGATATCCGATTTCGGACTTTCCGCCTTGCCGGAGCAGTTGCGCTATGACGGCCTCCTCCACACGCAATGCGGAACGCCTGCTTACGTGGCACCGGAGGTGCTCCGGAAGAAAGGCTACGACGGATCCAAGGCTGACACGTGGTCCTGCGGCGTCATCCTCTACGTGCTGCTCGCAGGGTTCCTTCCGTTCCGCGATGAGAATCTCATGACCATGTACAATAAGGTTCTCAGAGCGGAGTTTCAGTTTCCGCCGTGGTTCTCACCGGAAGCGCGAAGGCTGATTTCGAAGATCATGGTGGCGGATCCGGAGAGGAGAACCACGATTCCAGCGATCATGCGATCGCCGTGGTTCCGCAAAGGCTTTCAAGTACCTCCGGCGTTGGATTTGGATGAAAAGGAGAAGAAGGTTGAGGAAATTTTGGAAGATTCGAGAACGAATAGCAAGGTTTCGTCGCCGAAATTCTTCAACGCGTTCGAGTTTATCTCCTCGATGTCGTCCGGATTTGATTTGTCTGGACTATTTGAGAGCAAGAAGAGGAGCGGATCGATGTTCACTTCGCGGTGTTCGGCGCCGGTGGTGGTGGCGAAGATCCTTGCAGCGGCGAAGGGGTTGAGTTACAGGGTGTCGGAGGTGAAGGACTTCAGGATAAGGCTTCAAGGCCCATCGGAGGGTAGGAAGGGGAAGCTGGCAGTGACGGCGGAGGTGTACGAGGTGGCGCCGGAGGTTGCCATCGTGCAGCTCTCGAAGTCCGCCGGCGACACGTTGGAGTACGTTAAGTTCTGCGACGAGGAGGTCAGGCCTGCGTTGAAGGACATTGTGTGGACGTGGCAAGGTGACGCCACGTGTAACGCTAACCTCACCGCTGGTCACGGTGGGGAATGTCAACAACAAGAGGTCGTTGCATAA 1356 0.5435 MEECQCHTVFGKYEMGRLLGKGTFAKVYYGKQIATGESVAIKVINKEQVKREGMMEQIKREISVMALVKHPNIVELKEVMATKTKIFFVMEYVRGGELFAKISKGKLKEDLARKYFRQLISAIDFCHSRGVSHRDLKPENLLLDDDENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADTWSCGVILYVLLAGFLPFRDENLMTMYNKVLRAEFQFPPWFSPEARRLISKIMVADPERRTTIPAIMRSPWFRKGFQVPPALDLDEKEKKVEEILEDSRTNSKVSSPKFFNAFEFISSMSSGFDLSGLFESKKRSGSMFTSRCSAPVVVAKILAAAKGLSYRVSEVKDFRIRLQGPSEGRKGKLAVTAEVYEVAPEVAIVQLSKSAGDTLEYVKFCDEEVRPALKDIVWTWQGDATCNANLTAGHGGECQQQEVVA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31131g00001 451 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31131g00001 451 FunFam Non-specific serine/threonine protein kinase 6 303 - -
Stsc31131g00001 451 Gene3D Kinase associated domain 1, KA1 300 425 - -
Stsc31131g00001 451 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Stsc31131g00001 451 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31131g00001 451 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31131g00001 451 FunFam Non-specific serine/threonine protein kinase 300 424 - -
Stsc31131g00001 451 ProSiteProfiles NAF domain profile. 300 325 IPR018451 GO:0007165
Stsc31131g00001 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Stsc31131g00001 451 CDD STKc_SnRK3 12 266 - -
Stsc31131g00001 451 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 420 - -
Stsc31131g00001 451 CDD CIPK_C 306 420 - -
Stsc31131g00001 451 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Stsc31131g00001 451 Pfam NAF domain 302 358 IPR004041 GO:0007165
Stsc31131g00001 451 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Stsc31131g00001 451 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Stsc31131g00001 451 SUPERFAMILY Protein kinase-like (PK-like) 9 279 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31131g00001 Stsc-Chr31131 10412 12748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31131g00001 2 442 CBL-interacting serine-threonine protein kinases AT5G25110 68.680 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc31131g00001 Pkinase 8.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31131g00001 - - gmx:100817520 721.465