Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31128g00001 ATGGCGGTTTCTCCGACGGTGGCCGCACCTCCGGCGTCTCTTTACGTCGGTGACCTCCACCCGGACGTCTCCGACGGACAGCTCTCGGAGGCATTCTCGGAGTTCAAGAGCCTCGCCTCTGTTCGCGTTTGCAGGGACTCCTCCACCGGCAGGTCACTCGGTTATGGCTACGTTAACTTCGTCTCTCCAGAAGACGCAAATCAAGCGATCGAGCTGAAGAATCATTCCATGCTGAACGGGAAAGCGATTAGGGTCATGTGGTCGCGTCGTGATCCTGATGCAAGGAAGAGTAACATTGGGAACGTGTTTGTTAAGAACTTGGCCGAATCTGTTGACAATGCGGGGTTGCAAAATTTATTTAAACAATTTGGGGAAATTTTGTCCTGCAAAGTTGTCACGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAACCTGCAAATGCTGCCATCGAGAAGCTGAATGGCGCTAAAATTGCTGATAAGCAAATATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGTATTGTGCCTGGCCCTGATGCAAGATATACAAATTTGTACATGAAAAATTTGGACCCAGAAATTACAGAAGCATATCTGGAAGAAAATTTTTCTACTTATGGCAAAATTGTTAGCTTGGCTATTGCAAGGGATAGCAGTGGGGTGTCAAAGGGTTTTGCCTTTGTGAACTATGAAAACCCAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGAAAAACAATTTGCTAGAGCACAGAAGAAGGCTGAACGGGAGCAGATTTTGCTTAACCAGTTTGAGGAAAAACGTAAGGAACAAGTCTTGAAATACAAGGGATCAAATGTTTATGTGAAGAACATTGATGACAATGTTAGCGATGATGAACTGCGTGAACATTTTAGTGTATGTGGCACAATAACTTCTGCAAAAATTATGCGAGATGATAAAGGGACAAGCAAAGGCTTTGGTTTTGTCTGCTTCTCAACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTCCATGGAATTATGTTTCATCGGAAACCACTATATGTTGCTCTTGCTCAAAAGAAAGCAGATAGGCAGGCACAGTTGCAGCTCCAGTATGCACAGCAACTAACAGGACTAGGTGGACCTTCAACTGCCATTATCCCTGGTGGATATCCTCCCTACTACTATGCAGCTACTGGTGTTGTTTCACATGTTCCTGCTAGAGCTGGGCTGATGTATCAACCTATAACATTGAGGACAGGATGGAGGGCTAGTGGCTTTGCACCTCCTGCTAGACCATTGCCACAAACACCATTTCCTGTTGTTACAAACAATAACAGGCAGCATAGGACAAACAGGGGAAGGATGAACGGCAATACCATTTCACAGGGAAATGTTCACTCTGTTACTCATATGCCTCAATCACAGCAGACTACTCAGCCAGTGCCCTCTTCAAGAGAGTCAACTAATCAGCAGCGTGCCGGACAGGCTAGGTATGTACCTAGTGGGCACCAACGTGGGACTGAGAAAGGATCTGGATCATCTGCTGGTTCCAATTCTGATGGAGGATGCCAGGGATCAGAAATGCTGCATAGCATGCTTTCTGCAGCTTCTCCTGAGCAGCAGAAACGAATGCTTGGCGAGCGTATTTACGAGCATGTCAGCAAACTCCAGCCTGTCATAGCAGCGAAGATTACAGGTATGCTTCTGGAGATGGACAATCCAGAATTGCTGCTTCTCCTGGAATCACCGGAATCTCTTTCTTCTAAGGTGGAAGAAGCCGTGGAAGTGCTTAAGAACTCTAATACCAAAGTTTCTGGGCAGGATGTATTTCATTCAAAGTACTTTACAGCTGAG 1869 0.4553 MAVSPTVAAPPASLYVGDLHPDVSDGQLSEAFSEFKSLASVRVCRDSSTGRSLGYGYVNFVSPEDANQAIELKNHSMLNGKAIRVMWSRRDPDARKSNIGNVFVKNLAESVDNAGLQNLFKQFGEILSCKVVTSEDGKSKGYGFVQFESEEPANAAIEKLNGAKIADKQIYVGKFVKKSDRIVPGPDARYTNLYMKNLDPEITEAYLEENFSTYGKIVSLAIARDSSGVSKGFAFVNYENPDDAKRAMEAMNEKQFARAQKKAEREQILLNQFEEKRKEQVLKYKGSNVYVKNIDDNVSDDELREHFSVCGTITSAKIMRDDKGTSKGFGFVCFSTPEEANKAVNTFHGIMFHRKPLYVALAQKKADRQAQLQLQYAQQLTGLGGPSTAIIPGGYPPYYYAATGVVSHVPARAGLMYQPITLRTGWRASGFAPPARPLPQTPFPVVTNNNRQHRTNRGRMNGNTISQGNVHSVTHMPQSQQTTQPVPSSRESTNQQRAGQARYVPSGHQRGTEKGSGSSAGSNSDGGCQGSEMLHSMLSAASPEQQKRMLGERIYEHVSKLQPVIAAKITGMLLEMDNPELLLLLESPESLSSKVEEAVEVLKNSNTKVSGQDVFHSKYFTAE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31128g00001 623 SUPERFAMILY RNA-binding domain, RBD 182 256 IPR035979 GO:0003676
Stsc31128g00001 623 CDD RRM2_I_PABPs 99 174 IPR045305 -
Stsc31128g00001 623 Gene3D - 180 260 IPR012677 -
Stsc31128g00001 623 Gene3D - 261 376 IPR012677 -
Stsc31128g00001 623 MobiDBLite consensus disorder prediction 442 502 - -
Stsc31128g00001 623 FunFam Polyadenylate-binding protein 4 99 - -
Stsc31128g00001 623 SUPERFAMILY RNA-binding domain, RBD 11 179 IPR035979 GO:0003676
Stsc31128g00001 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Stsc31128g00001 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Stsc31128g00001 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 257 IPR000504 GO:0003723
Stsc31128g00001 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Stsc31128g00001 623 Gene3D - 4 100 IPR012677 -
Stsc31128g00001 623 MobiDBLite consensus disorder prediction 436 531 - -
Stsc31128g00001 623 SMART rrm1_1 13 86 IPR000504 GO:0003723
Stsc31128g00001 623 SMART rrm1_1 288 360 IPR000504 GO:0003723
Stsc31128g00001 623 SMART rrm1_1 192 266 IPR000504 GO:0003723
Stsc31128g00001 623 SMART rrm1_1 101 173 IPR000504 GO:0003723
Stsc31128g00001 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Stsc31128g00001 623 SMART poly_2 542 605 IPR002004 GO:0003723
Stsc31128g00001 623 SUPERFAMILY RNA-binding domain, RBD 284 380 IPR035979 GO:0003676
Stsc31128g00001 623 FunFam Polyadenylate-binding protein 270 378 - -
Stsc31128g00001 623 Gene3D - 528 619 - -
Stsc31128g00001 623 FunFam Polyadenylate-binding protein 101 181 - -
Stsc31128g00001 623 PANTHER RNA BINDING PROTEIN 286 480 - -
Stsc31128g00001 623 Gene3D - 101 179 IPR012677 -
Stsc31128g00001 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Stsc31128g00001 623 Pfam Poly-adenylate binding protein, unique domain 538 602 IPR002004 GO:0003723
Stsc31128g00001 623 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 530 607 IPR002004 GO:0003723
Stsc31128g00001 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Stsc31128g00001 623 Coils Coil 247 276 - -
Stsc31128g00001 623 SMART rrm2_1 187 264 IPR003954 GO:0003676
Stsc31128g00001 623 SMART rrm2_1 288 360 IPR003954 GO:0003676
Stsc31128g00001 623 SMART rrm2_1 101 173 IPR003954 GO:0003676
Stsc31128g00001 623 SMART rrm2_1 13 86 IPR003954 GO:0003676
Stsc31128g00001 623 CDD RRM4_I_PABPs 286 364 - -
Stsc31128g00001 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 275 IPR000504 GO:0003723
Stsc31128g00001 623 MobiDBLite consensus disorder prediction 511 531 - -
Stsc31128g00001 623 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 603 IPR006515 GO:0003723
Stsc31128g00001 623 SUPERFAMILY PABC (PABP) domain 467 613 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31128g00001 Stsc-Chr31128 3893 7244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31128g00001 9 95 Eukaryotic Initiation Factors Gene Family AT2G36660 27.586 9.53e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31128g00001 K13126 - gmx:100779547 899.042