Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31123g00004 ATGAGGATCTTGTCTATCAGAAATGAAACTGAACAGATCCTTGGGATTTTCGTGTCCTGGAAAACAAGGGCCATGAACATGGATATGCTTGTTACCCTAGTCTGGGTTCCCTTGTTAGTGATGCCGTGGATAGGCTGTGAATTTTTGGGGTTAAGGACTCGTAACAATCATATCTGTGGTCGAACCTTTGGAAGTACGCATCGACTACGAAGTATTCGGGTTGCTGTCTATGTTCATCAAGCAGCAGATTTTTTAAAGAATGCTATTGGTTCAGTACCTGAATACAAGATATCGGAAAACACAAGAAAATGTGGTTTCGGTATTGATCCAGATGATATAGCAACGCTTGTTTCTGCCCATGATCTAAAGAACTTTAAAAAGTTTGGCGGAGCTGAAGGGATTGCGGGGAAACTCTCAGTTTCCTTGGATGATGGTGTTAGCAAAGATAGTATAGATAACAGGCAACAGATTTATGGCCTTAACCGTTACACGGAGAAGCCTTCAAAATCTTTCTTGATGTTTGTTTGGGAGGCACTGCATGACTTAACACTAATCATTCTCATGGTTTGTGCTCTAGTTTCTATAGGTATAGGGCTTCCCACTGAAGGATGGCCAAAGGGTGTTTATGATGGTCTTGGTATCATACTCAGTGTGTTTTTGGTTGTTACTGTTACTGCTGTTAGTGACTACCAGCAATCCTTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTTTGTCCAGGTGACCAGGGATGGGAAGAGACAGAAGGTTTCAATTTTTGATTTGGTAGTAGGAGATATTGTCCATTTGTCAACCGGTGATCAAGTTCCGGCTGACGGCGTTTTTGTAACAGGGTACTCATTACTAATTGATGAATCAAGTTTGTCAGGTGAGAGTGAACCAGTAAATGTAGATGAACAAAAACCTTTCCTTCTTGCTGGAACCAAAGTGCAGGATGGTCAAGGGAAGATGATAGTTACCACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTTTAAATGAGGGAGGTGAGGAGGAGACTCCATTGCAAGTGAAATTGCACGGCGTTGCGACGATTATTGGTAAAATCGGTTTGGTTTTTTCTGTGCTGACATTTCTGGTGTTGACAATAAGGTTTCTTGTTGAGAAAGCAATTTCTGGTGACTTTGGTAGTTGGTCTATGAATGATGCAATGAAGCTGTTGGATTACTTTGCCATTGCTGTGACCATAATAGTTGTTGCAATTCCAGAAGGCTTACCATTGGCTGTGACACTAAGTCTTGCTTTTGCCATGAAAAAATTAATGAATGACAAGGCACTTGTGAGACATCTTTCGGCGTGTGAGACTATGGGTTCAGCAAGTTGCATTTGCACAGATAAGACAGGAACATTAACCACTAACCATATGGTTGTGAACAAGATCTGGATATGCGAAAAAGAGGCAGAGATCAAAGGTAATGAGAGTGCAGAGAAGCTGAAAACAGAGATACCTGAGGAAGTAATGAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGATAAAACAGGTAAAAACACAATATTGGGAACACCAACAGAATCAGCATTGTTGGAATTTGGTTTGCTAACAGGTGGTGATTTTGATGCACAGCGCAGTACCTATAAGATAATTAAGGTTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTTGTGAGTCTTCCTGATGGAGGGGTCAGAGCTTTCTGCAAAGGAGCATCAGAAATAATACTAAGAATGTGTGACAAAATCATCGATTGTAATGGAAATGCTGTTGATCTTCCTGAAGAACAGGCAAATAAAGTTAATGATGTCATAAATGGTTTTGCCTCCGAAGCTCTGAGAACTCTTTGTTTGGCTGTTAAAGATATAGATGCAACAGAAGGGGAAAACAGTATCCCTGAAAATGGCTATACTCTGATAGCAATTGTAGGAATCAAGGATCCTGTGCGTCCCGGGGTCAGGGAAGCAGTTCAAAGTTGTTTAGCAGCTGGAATAACCGTCCGAATGGTCACGGGCGATAACATAAATACAGCTAGGGCCATAGCTAAAGAATGTGGTATACTCACCGATGGTGGTGTAGCTGTAGAAGGACCGGAGTTTCGAAACTTGTCGCCAGAGCAAATGAAGGATGTCATACCAAGAATTCAGGTAATGGCACGTTCACTACCTCTTGACAAGCACACCTTAGTATCCAATTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTAACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCAAAAGAAAATGCTGATGTGATTATATTGGATGATAACTTCACAACTATTGTCAATGTGGCCAAATGGGGACGTGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGCTAACTGTGAATATTGTTGCTCTGGTTATAAACTTTGTTTCTGCATGCATCACTGGATCTGCACCACTCACAGCTGTTCAGTTGCTTTGGGTCAATTTGATTATGGACACATTGGGTGCATTGGCTCTGGCTACTGAGCCTCCCAATGATGGACTAATGGAAAGACCCCCAGTTGGAAGAAAAGCAAGTTTTATCACCAAACCAATGTGGAGGAACATCTTTGGTCAGAGTTTGTATCAATTGATTATCCTTGTTGTTCTCAATTTTGATGGAAAGAGACTACTGGGACTTACTGGTTCAGATGCAACTCAAGTGCTCAACACTTTGATCTTCAACTCCTTTGTATTTTGCCAGGTATTCAACGAGATAAACAGCAGAGAAATTGAAAAGATAAATATATTCAGAGGCATGTTTGACAGCAAGATATTCTTCGCCGTGATTTTCTCCACGTGCATTCCAGTTGAAAGAGACACAACAACAAAGCACCATGATGGTTATGAAGCACTCCCTTCTGGTCCAGAGCTTGCTTAA 3012 0.415 MRILSIRNETEQILGIFVSWKTRAMNMDMLVTLVWVPLLVMPWIGCEFLGLRTRNNHICGRTFGSTHRLRSIRVAVYVHQAADFLKNAIGSVPEYKISENTRKCGFGIDPDDIATLVSAHDLKNFKKFGGAEGIAGKLSVSLDDGVSKDSIDNRQQIYGLNRYTEKPSKSFLMFVWEALHDLTLIILMVCALVSIGIGLPTEGWPKGVYDGLGIILSVFLVVTVTAVSDYQQSLQFRDLDKEKKKIFVQVTRDGKRQKVSIFDLVVGDIVHLSTGDQVPADGVFVTGYSLLIDESSLSGESEPVNVDEQKPFLLAGTKVQDGQGKMIVTTVGMRTEWGKLMETLNEGGEEETPLQVKLHGVATIIGKIGLVFSVLTFLVLTIRFLVEKAISGDFGSWSMNDAMKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKEAEIKGNESAEKLKTEIPEEVMSILLQAIFQNTSSEVVKDKTGKNTILGTPTESALLEFGLLTGGDFDAQRSTYKIIKVEPFNSVRKKMSVLVSLPDGGVRAFCKGASEIILRMCDKIIDCNGNAVDLPEEQANKVNDVINGFASEALRTLCLAVKDIDATEGENSIPENGYTLIAIVGIKDPVRPGVREAVQSCLAAGITVRMVTGDNINTARAIAKECGILTDGGVAVEGPEFRNLSPEQMKDVIPRIQVMARSLPLDKHTLVSNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIILDDNFTTIVNVAKWGRAIYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERPPVGRKASFITKPMWRNIFGQSLYQLIILVVLNFDGKRLLGLTGSDATQVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFDSKIFFAVIFSTCIPVERDTTTKHHDGYEALPSGPELA 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31123g00004 1003 Pfam Cation transporting ATPase, C-terminus 848 978 IPR006068 -
Stsc31123g00004 1003 FunFam Calcium-transporting ATPase 780 981 - -
Stsc31123g00004 1003 Pfam Cation transport ATPase (P-type) 518 602 - -
Stsc31123g00004 1003 SFLD Haloacid Dehalogenase 444 816 - -
Stsc31123g00004 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 978 IPR023298 -
Stsc31123g00004 1003 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 468 672 IPR023299 GO:0000166
Stsc31123g00004 1003 Gene3D - 177 976 - -
Stsc31123g00004 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 464 470 IPR018303 -
Stsc31123g00004 1003 Pfam Cation transporter/ATPase, N-terminus 130 194 IPR004014 -
Stsc31123g00004 1003 NCBIfam HAD-IC family P-type ATPase 732 851 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 NCBIfam HAD-IC family P-type ATPase 214 384 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 NCBIfam HAD-IC family P-type ATPase 399 486 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 NCBIfam HAD-IC family P-type ATPase 556 708 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 PANTHER CATION TRANSPORTING ATPASE 99 979 - -
Stsc31123g00004 1003 SFLD p-type atpase 444 816 IPR044492 -
Stsc31123g00004 1003 FunFam Calcium-transporting ATPase 472 667 - -
Stsc31123g00004 1003 SUPERFAMILY Calcium ATPase, transduction domain A 247 343 IPR008250 -
Stsc31123g00004 1003 SMART Cation_ATPase_N_a_2 130 199 IPR004014 -
Stsc31123g00004 1003 NCBIfam calcium-translocating P-type ATPase, PMCA-type 121 977 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc31123g00004 1003 CDD P-type_ATPase_Ca_PMCA-like 151 896 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 787 799 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 293 307 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 682 692 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 763 782 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Stsc31123g00004 1003 PRINTS P-type cation-transporting ATPase superfamily signature 660 671 - -
Stsc31123g00004 1003 Gene3D - 145 345 - -
Stsc31123g00004 1003 Gene3D - 459 808 IPR023214 -
Stsc31123g00004 1003 SUPERFAMILY HAD-like 461 868 IPR036412 -
Stsc31123g00004 1003 Gene3D - 472 667 IPR023299 GO:0000166
Stsc31123g00004 1003 FunFam Calcium-transporting ATPase 222 345 - -
Stsc31123g00004 1003 PRINTS H+-transporting ATPase (proton pump) signature 763 779 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 PRINTS H+-transporting ATPase (proton pump) signature 620 638 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 PRINTS H+-transporting ATPase (proton pump) signature 795 820 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31123g00004 1003 FunFam Calcium-transporting ATPase 660 808 - -
Stsc31123g00004 1003 Pfam E1-E2 ATPase 247 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31123g00004 Stsc-Chr31123 17775 23697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31123g00004 72 1000 Primary Pumps ATPases AT3G57330 69.373 0.0 1377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31123g00004 K01537 - gmx:100785768 1526.53