Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31117g00001 ATGGATACTAGTAGTGTTGGTGGCGGAGACTTCAACTTCAACTTCAACGTGAGTGTGATTAATGAAGAGGTGGTAGCGGCGGTTCTACCAATTCAAGAACACTGGCTACCACTCTCTAACCTCGATCTCCTCCTTCCTCCGGTCGACGTGGGAGTGTTCTTTTGCTACAAGAACAACCACACAATGGCGATGGATAGCTTTGCAACCATGGTGGGGTGTTTGAAGAAATCGCTGTCCCAAGCTCTTGTGTCTTACTATGCATTTGCAGGTGAAGTGGTGGCGAACACGGCGGGTGAACCGGAGTTGCTATGCAACAACCGTGGTGTTGATTTTGTTGAAGCTGTTGCAGACATTGAGCTTCGGTGTCTCAACTTGTACAATCCTGATGACTCCATTGAAGGGAAGCTTGTTCCAAGGAAGAAGCGTGGCGTCTTTGGTGTCCAGGCAACATCACTCAAGTGCGGTGGGATAGTGGTGGCATGCACATTTGATCATCGCATAGCAGATGCATACTCAGCAAACATGTTCCTTGTATCATGGGCCAACATGGCCCACCAAACAAGGCCCAACAAGCCCACAACCATTCACCACCAGAAGCCATGCTTCCGTCGCTCCCTTCTCAGTCCCCGCCGCCCAGGAATCATCCACCCTTCCCTCCACGGCATGTACATCCCCATCTCCAAGCTCCCACCGCCACCAGCCACCATCGCCACCCCTCTCCTCAGCCGCATTTACTATGTCACGGCAAAGCAGCTCCAACACATGCAGTCACTCGCTAGCAACAACGGTGGCGCCAAGCGGACAAAACTTGAGTCGTTCTCAGCGTTCTTGTGGAAGATGGTTGCTCGTGCAGCATTAAGAGACATCAAAGGCAAAAAGGTTGTTATTGCCAAAATGGGCATTGTGGTTGATGGAAGGAAAATGCTAGCTGATGGTAGTGGTAGTAGTGTTGACGAAGGGAGAAAGTCAATGATGAATTCTTATTTTGGAAATGTGCTTTCCATACCCTTTGGTGCAAAACTGGTGGAGGAGCTAGTGGAGAAACCGTTAGGGTGGGTGGCAAATGCAGTTCATGAGTTTCTCGAGCTGGCAGTGACGGAGGAGCACTTTTTAGGGCTAATTGATTGGGTGGAAGCACACCGGCCGGTTCTAGGGTTGGCAAAGATTTATTGCAATGGCTCCCACGACGAGGGGCCAGCATTCGTGGTATCGTCCGGACAAAGGTTCCCGGAGGAGAAGGTAGATTTTGGGTGGGGAAAGGCTGTGTTTGGCTCTTACCATTTTCCTTGGGGTGGAGAAGCTGGCTATGTGATGCCAATGCCTAGCCCTCTTTTGAATGGTGATTGGGTTGTTTACATGCACCTTGTGAAGGAACAATTAGAGATCATAGAGTCTGAGGCTTCCCATTTCTTTAAGCCTTTAACTTGGGAGTACCTTAATCAATGA 1446 0.4986 MDTSSVGGGDFNFNFNVSVINEEVVAAVLPIQEHWLPLSNLDLLLPPVDVGVFFCYKNNHTMAMDSFATMVGCLKKSLSQALVSYYAFAGEVVANTAGEPELLCNNRGVDFVEAVADIELRCLNLYNPDDSIEGKLVPRKKRGVFGVQATSLKCGGIVVACTFDHRIADAYSANMFLVSWANMAHQTRPNKPTTIHHQKPCFRRSLLSPRRPGIIHPSLHGMYIPISKLPPPPATIATPLLSRIYYVTAKQLQHMQSLASNNGGAKRTKLESFSAFLWKMVARAALRDIKGKKVVIAKMGIVVDGRKMLADGSGSSVDEGRKSMMNSYFGNVLSIPFGAKLVEELVEKPLGWVANAVHEFLELAVTEEHFLGLIDWVEAHRPVLGLAKIYCNGSHDEGPAFVVSSGQRFPEEKVDFGWGKAVFGSYHFPWGGEAGYVMPMPSPLLNGDWVVYMHLVKEQLEIIESEASHFFKPLTWEYLNQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31117g00001 481 Pfam Transferase family 16 469 - -
Stsc31117g00001 481 Gene3D - 226 466 IPR023213 -
Stsc31117g00001 481 Gene3D - 14 221 IPR023213 -
Stsc31117g00001 481 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 29 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31117g00001 Stsc-Chr31117 7366 13699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31117g00001 26 464 Monolignol Biosynthesis Gene Families AT5G48930 26.144 1.77e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31117g00001 - - tpra:123917257 679.093