Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31112g00003 ATGTTAATGTCAGGTAGAATGGATCAATTCACCCAACAGTTTCACTCAGATCCATTTCAAGGTGGTGAGTTAATGGAAGTTCTTCAACCTTTTTTCAAAAGTCCTTCCACGTCAGCAACCACCACCACAAACACATTTACTTCTTTACCCTCCTCTTCATCTAATTCCCATCTACCTTCTTCAACTTCCCCCACCTTCAATTCTTCTTCTTCTACCAACTTCTATTCTTCTCCTTCTTTTTTAATGTCTCCACAGCTCAATTTCAGCCAGAATTTCGTTGGCTTTGAGCAAGTCTCCTTTTCTTCCTATCCTATTGGGCCGGACTACCAGATCCAGGCCCAACACCAAGCCCAATACGAAGCCCAACAAAAGAGCAACACGCTGAGCTTCCTGAGCCCAAAGCCGGTTCCGATGAAGCAAAGCGGAACCCCGCCGAAGGCAACGAAGCTCTACAGAGGCGTACGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCAGACTCCCAAAGAATCGAACTCGGCTTTGGCTTGGAACCTTCGAAACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCTTTTAAGCTAAGAGGTGATTTCGCGAAGCTAAACTTCCCTAACCTTAAGCACCACGGTTCTTGCGTTGTTGGCGGCGGTCTCGGGGAGTATAGGCCTCTTCATTCCGCGGTTGATGCCAAGTTGGATGCTATTTGTGAGAATCTCGCTCAGATTCAGAAACAGGGGAAGCAGGAGAAGAAGCCTGTGGTGAGGTCAAAGTCAAAGTCAAAGTCAGACCCAATTACTCCTAAGGTAGAACAAAATGAAGAAGCCTCTGATAGCTCTTCGCCTTTGTCTGATCTTACGTTTGATGACGTCACTGAGTTACAGTGGGATCTTCCTTCAGAACATTTTAATCTGCAGAAGTTCCCTTCTTATGAGATCGATTGGGATTCTTTGTGA 963 0.4611 MLMSGRMDQFTQQFHSDPFQGGELMEVLQPFFKSPSTSATTTTNTFTSLPSSSSNSHLPSSTSPTFNSSSSTNFYSSPSFLMSPQLNFSQNFVGFEQVSFSSYPIGPDYQIQAQHQAQYEAQQKSNTLSFLSPKPVPMKQSGTPPKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDKAAFKLRGDFAKLNFPNLKHHGSCVVGGGLGEYRPLHSAVDAKLDAICENLAQIQKQGKQEKKPVVRSKSKSKSDPITPKVEQNEEASDSSSPLSDLTFDDVTELQWDLPSEHFNLQKFPSYEIDWDSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31112g00003 320 SMART rav1_2 150 213 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 320 - -
Stsc31112g00003 320 MobiDBLite consensus disorder prediction 42 69 - -
Stsc31112g00003 320 SUPERFAMILY DNA-binding domain 150 207 IPR016177 GO:0003677
Stsc31112g00003 320 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 MobiDBLite consensus disorder prediction 274 288 - -
Stsc31112g00003 320 CDD AP2 149 209 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 MobiDBLite consensus disorder prediction 251 273 - -
Stsc31112g00003 320 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 MobiDBLite consensus disorder prediction 249 288 - -
Stsc31112g00003 320 ProSiteProfiles AP2/ERF domain profile. 150 207 IPR001471 GO:0003700|GO:0006355
Stsc31112g00003 320 Gene3D AP2/ERF domain 150 208 IPR036955 GO:0003700|GO:0006355
Stsc31112g00003 320 FunFam Ethylene-responsive transcription factor 2 149 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31112g00003 Stsc-Chr31112 19138 20100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31112g00003 3 320 AP2-EREBP Transcription Factor Family AT1G78080 46.779 3.69e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc31112g00003 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31112g00003 K09286 - gmx:732559 298.13