Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31111g00004 ATGGAAATGGAAGGTTTTGCTGCTTCATCAGAGAGGAGTAGTGGTGGTGATGGTTTAACTAATCAAGTGAGTGTTGTTGGAGGTGGGTATGCTTCATCTTCTTCACTGGTTTTGGATAGGGACAAGGGTGAGTTGGTTGAGGCACCCGTGAAATTAGAGAGAAAGGGTGTGTTCCCTGAGAGAAGCATTGAAGCTTTGAAGAACCACAGTGAAGCTGAGAGGAGGAGAAGAGCTAGAATCAATGCACACCTTGATACACTCAGAACTGTCATCCCTGCTGCTAACAAGATGGACAAAGCATCATTACTGGCTGAGGTTATTAGGCATCTGAAAGAGCTGAAAATGAATGCAGCACAAGCATGTCAAGGCCTAATGATACCAAAGGACAATGATGAGATAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGCTTCCCTTATTCAATAAGAGCATCTCTATGCTGTGAATACAAACCCGGCTTGTTATCTGATATAAGACAAGCACTTGATGCACTCCATCTTATGATAATAAGCGCGGAGATCGCCACGTTAGGAGGGAGGATGAAGAATGTGTTTGTGATAATCAGCTGTGAAGAGCAGAGCTTTGAAGACGCCGAGTACCGGCAGTTCCTCGCCGGATCGGTCCACCAAGCTCTTAGGTCTGTTCTTGATAGGTTTTCTGTTTCACAGGACATCTTACAGTCTAGAAAGAGGAGGAGAATTTCTATATTCAGTTCATCATCCTTGGAAGATTTTTTGCATATTGGAAGTAATTGTTTGATAAGCTAG 789 0.4335 MEMEGFAASSERSSGGDGLTNQVSVVGGGYASSSSLVLDRDKGELVEAPVKLERKGVFPERSIEALKNHSEAERRRRARINAHLDTLRTVIPAANKMDKASLLAEVIRHLKELKMNAAQACQGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIISAEIATLGGRMKNVFVIISCEEQSFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILQSRKRRRISIFSSSSLEDFLHIGSNCLIS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31111g00004 262 MobiDBLite consensus disorder prediction 1 21 - -
Stsc31111g00004 262 PANTHER TRANSCRIPTION FACTOR BHLH30 22 245 IPR045847 GO:0003700|GO:0006355
Stsc31111g00004 262 SUPERFAMILY ACT-like 152 228 IPR045865 -
Stsc31111g00004 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 119 IPR036638 GO:0046983
Stsc31111g00004 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Stsc31111g00004 262 ProSiteProfiles ACT domain profile. 150 235 IPR002912 -
Stsc31111g00004 262 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Stsc31111g00004 262 Gene3D - 60 121 IPR036638 GO:0046983
Stsc31111g00004 262 SMART finulus 70 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31111g00004 Stsc-Chr31111 16748 18950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31111g00004 51 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 1.98e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc31111g00004 HLH 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31111g00004 - - lja:Lj3g3v2848980.1 393.66