Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31106g00004 ATGGTGACGAACACAATCAAGGTCGTGAAAGTGAAGAGAGACACGCTACGAGCATGCATGACATGCCCTCTTTGCAGTAACCTCCTCAAAGATGCAACCACCATCTCTCTCTGCCTCCACACATTTTGTAGGAAGTGTATATATGAGAAGCTCTCAGATGAGGAGGTGGATTGCTGTCCTGTGTGCAACATTGATCTCGGCTGCCTTCCGGTCGAAAAACTCAGGTCACTTGTTGTCTCCGACTGCCGAATTTCTTTGTCGCAATTTTTATGGTTTATTACTTCTTTCAGTATAACTGAACACAGCAAACATAAAGCTCTAATCTCCGGC 330 0.4515 MVTNTIKVVKVKRDTLRACMTCPLCSNLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRSLVVSDCRISLSQFLWFITSFSITEHSKHKALISG 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31106g00004 110 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 76 IPR044807 GO:0004842
Stsc31106g00004 110 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Stsc31106g00004 110 SMART ring_2 22 62 IPR001841 -
Stsc31106g00004 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Stsc31106g00004 110 SUPERFAMILY RING/U-box 16 67 - -
Stsc31106g00004 110 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Stsc31106g00004 110 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31106g00004 Stsc-Chr31106 22560 23953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31106g00004 8 86 C3H Transcription Factor Family AT2G30580 65.000 3.83e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31106g00004 K16277 - qsu:112037385 142.124