Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31104g00001 ATGTTTGATGTGAATAGGAATAAGTGTGCGGCATGCTTCAGGCAGTTCAACAGACTGGAGCACCTGGTGGAGCACATGAGAATCTCATACCATTCTGTTCATGAACCAACTTGTCCCATTTGCAGAAAACACTGCAGGTCTTTTGAGTCTTTAAGGGAACACCTTATAGGTCCATTGCCGAAACAAGAATGCCGAGATATATTTGCATACCGAGGGTGCAAGTTTTGTCTGAAGGTCTTTGACAGCCCTAACTCGCGCAGGGTTCACCAAGAAAAATGCCAACTCTCTGGCCTAACTTCTGGATTAATTGGTCGGTTTTCTAGCATGGGTCTTCGAGATAACTTGGCAATTGGATCAAGAGGAGCACAAGTAGTTGCACTTGCTTGTAAAATGGTTGGTGGAGGCAGTGATGGCTCACTTGATCTTTGTGCAAGAGTATGCATCATCGATGAGCATGAGAACATCATCTTCCATTCTTATGTCAAGCCGCCATTTCCAGTCACAAATTATAGGTACGAGACAACAGGAATTAGAGCAGAATACTTGAGGGATGCAATACCAGTGAGGCAAGTTCAGAGGAAGATTCAAGACTTCCTTTGCAATGGAGAACCCATGTGGACAATTAGAGCAAGAGGTGGCAAAGCCAGGATTCTTGTTGGTCATGGTTTGGATCATGACCTAGAATGTCTCCAAGTAGAGTACCGACCAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACAAGCAAGTTGAGCAACTCACTTAAATACTTAACACAAACGTATCTTGGGTATGACATTCAAACTGGGATACAGGATCCTTATGATGATTGTGTTGCAACAATGAGACTGTACAAGCGAATGAGGTCCCAAGCACATAGAGTAGAGGATTACCCTTTGGCATCTGACCCTCAGAACAGAAACAATTTTGCTTCTTGGAGGCAAAGCGACCTTGAAAGAATGAGTCCAGAACAGATGCTTGAAATTTCAAGGTCTGATTACTATTGCTGGTGCATCGATTCCTTATATACCTCATGA 1047 0.4336 MFDVNRNKCAACFRQFNRLEHLVEHMRISYHSVHEPTCPICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRVHQEKCQLSGLTSGLIGRFSSMGLRDNLAIGSRGAQVVALACKMVGGGSDGSLDLCARVCIIDEHENIIFHSYVKPPFPVTNYRYETTGIRAEYLRDAIPVRQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQVEYRPEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVATMRLYKRMRSQAHRVEDYPLASDPQNRNNFASWRQSDLERMSPEQMLEISRSDYYCWCIDSLYTS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31104g00001 348 ProSitePatterns Zinc finger C2H2 type domain signature. 9 31 IPR013087 -
Stsc31104g00001 348 SUPERFAMILY Ribonuclease H-like 137 292 IPR012337 -
Stsc31104g00001 348 FunFam RNA exonuclease 4 120 307 - -
Stsc31104g00001 348 SMART exoiiiendus 123 297 IPR013520 -
Stsc31104g00001 348 CDD REX4_like 125 289 IPR037431 GO:0006364|GO:0008408
Stsc31104g00001 348 Gene3D - 120 306 IPR036397 GO:0003676
Stsc31104g00001 348 Gene3D Classic Zinc Finger 8 56 - -
Stsc31104g00001 348 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 338 IPR047021 GO:0004527
Stsc31104g00001 348 Pfam Exonuclease 141 288 IPR013520 -
Stsc31104g00001 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 36 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31104g00001 Stsc-Chr31104 12952 16116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31104g00001 6 345 C2H2 Transcription Factor Family AT3G27970 74.636 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31104g00001 - - aprc:113862359 667.151