Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31102g00001 ATGTCCCAAAAAATTGTTTTCATTTTCCTCTTTGTCCTTATTACTGTAAAACTGTATTCAGTTGCAAGTGAAAAGAGTGAAGCAAATGCACTGTTAAAGTGGAAGGCCAGCCTTGAGAACCAAAGCCAACTTGTTTTATCATCTTGGAAGAATGGAACAAGTCCATGCACAAGATGGAGAGGAATTCAATGTGATACATCCAATTCCGTAATCACCATCAATCTTCACAATTATCAGCTCCAAGGTACACTCCACACTCTAGACTTTTCTTCACTCCCCAACCTCCTCACCTTTGACATCTACAACAACTCATTTCATGGAACCATCCCCCCACAAATTGGCAACATGTCCAAAATCAGTCGTTTGAACTTTTCTTTAAATACCTTTCATGGTTCCATCCCTCGAGAGATGTGGACACTCAGAAGCTTACGCTCGCTGGATACTTGGTTCTGTAATTATCTAACAGGACCCATCCCTGCTTCCATTGCAAATTTGACAAACTTATCATATCTAGCTTTAGGAGGCAACAATTTCTCCGGCTCCATTCCTCCTGAAATTGGCAAACTGAAAAATCTTGCCTATCTTGATATTCAGTCTAGTAACATTGTTGGTCCCATTCCCCGTGAAATTGGAATGTTGTCAAATCTAGAGTATATTGATTTCACAGAAAACAATATCTCTGGCAATATCCCTTCTACAATTGCTAACTTGAGCAGGTTAAATCAACTTTACCTATCTAACAACACACTCTCTGGCCTAATCCCACCATCCCTATGGAACATGTCTAACCTGACCATGTTGTGGCTTTATTACAATCAGCTTTCTGGAACTATCCCTACCTCAGTAGGAAACTTGATCAATTTGGAGTCCCTTGATGTGCAGAACAACCAACTTTCGGGATCCATTCCTTCCACAATTGGCAACATGACAAAGCTCACAGAAATAGTTCTGAACAACAACTTTTTTTTTGAGTCAATTCCTACTTCTGTTGGCAATTTGATCAACTTGGAAACCTTAGGTCTCCAAAATAACACTCTCTCTGGACCAATTCCTAACACAATTGGAAACTTGAAAAGGCTCTCCACATTGGAATTGTCCTACAACATACTTAGTGGCAACATTCCGCAAACCATTAATAACCTTACCAACATGAATAGCTTTCTTGTAGCCAATGCTGGTCTCAGTGGCCACTTGCCGTCTCAAATCTGCTTAGGTGGTTCACTAACGACCTTAAATGCTCAAAACAACCATTTTACCGGTCCAGTACCAAGCAGCTTGAAGAACTGCTCTAGTATTGTCATGATAACTTTACAGGATAACCATTTGGAAGGAGACGTATCACAAGACTTTGGTGTTTATCCAAATTTGAATTACATTGATCTAAGTAACAATAAATTTTATGGCCAAATTTCACCAAACTGGGGCAAGTGCAATAGTCTTGAATTCCTCATCATTGCCAAAAATAACATTTCCGGCGGTATACCGCCACAAATTGCTGAGGCTACCGAGCTGGGCAAGCTTCACCTTTTTTCAAATCAATTGACCGGAAATATTCCAAAAGCACTGGGAAAAATGAAAAACTTGGTTGAACTCAAGGTTGCAAACAATCATCTTTCCGGAAAGATTCCATCCGAGATAGGATTGTTGCAAGCTCTCAATCACTTGCATCTAGGAGGAAATGACTTGATTGGCAGCATACCGGGACAAGTTGTTCAGTTACCTAACTTGTTGGAATTGAACTTGAGCAACAACAAATTAGGGGGAAGCATACCCTCTGACTTCAAGTCATTGCAACCTCTCTATTCTCTTGATCTTAGTGGCAATTTGTTGAATGGAGCAATACCGAGAGTGCTTGGAGAACTGCAGCACTTGAAATGCTTGAACCTCTCTCGCAATAATCTATCTGGCAATATTCCATCCAGTTTTAATGGCATGTCAGCCTTGAATTCTGTCAACATATCATACAACCAGTTAGACGGGCCTCTTCCAGATAATAAAGCCTTTCTTCATGCTTCAATCGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTCACTGGCTTGGTGCCGTGCCCAAACAGCAGTCCAAGCGGCAAAAGTCACAAGGTGGTGTTATTGGTTTTACTTGTTATCTTTGGAGTACTAGCACTAGCACTTTCTGTGATTGCTGTTTCAGTATATATTCTTTGTAGAAGAGCAAGAAAGAAAGAAGACCCAGCTAAAGAAATGCAACCAGAAGAACACTTTTCCATATGGAGCCGTGATAGAAAAATGACATTTAAAACAATCACTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAATTGGAGGGCAAGGATCCGTTTACAGGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTGAAGAAACTTCGTCTGGAATCAGATGCAGAGGACAAATACAATTCGAAAGCATTTGAGAATGAAATCAAAGCATTGACAGAAATGAGGAGGGTGAATGCGGTTAAAGGAGTTGCTAATGCTTTGTCATACATGCATCATGGTTGCGTACCCCCTATAGTTCATCGCGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAGGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAGATTCAAATTGGACCACACTTGCAGTACTCACCTATGGGTATGGAGCTCCAGAGCTTGTTCAAACTATGGAAGTGACAGAGAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTTGAGATCCTTATGGGAAAACATCCAGCAGACCTCATAAGTTCATTATTGTCACCATCAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTAATAGATCAGAGGCCTCCCCATCCTGAGAAGTCAGTGGTTGGGGAAATAATGTTGATCACTAAGTGGGCACTTGAGTGTTTGAGCCAAAGTCCACAATTTCGGCCAAGCATGCATCAAGTTTCTAAAGAACTCATGGATGGAAAAGCACCTTTCGATGATGACCACTTTCCAATGATCAGACTTGGACAACTCAATGAAGAATTGGAAAGTCCACTCATGTGA 3078 0.4048 MSQKIVFIFLFVLITVKLYSVASEKSEANALLKWKASLENQSQLVLSSWKNGTSPCTRWRGIQCDTSNSVITINLHNYQLQGTLHTLDFSSLPNLLTFDIYNNSFHGTIPPQIGNMSKISRLNFSLNTFHGSIPREMWTLRSLRSLDTWFCNYLTGPIPASIANLTNLSYLALGGNNFSGSIPPEIGKLKNLAYLDIQSSNIVGPIPREIGMLSNLEYIDFTENNISGNIPSTIANLSRLNQLYLSNNTLSGLIPPSLWNMSNLTMLWLYYNQLSGTIPTSVGNLINLESLDVQNNQLSGSIPSTIGNMTKLTEIVLNNNFFFESIPTSVGNLINLETLGLQNNTLSGPIPNTIGNLKRLSTLELSYNILSGNIPQTINNLTNMNSFLVANAGLSGHLPSQICLGGSLTTLNAQNNHFTGPVPSSLKNCSSIVMITLQDNHLEGDVSQDFGVYPNLNYIDLSNNKFYGQISPNWGKCNSLEFLIIAKNNISGGIPPQIAEATELGKLHLFSNQLTGNIPKALGKMKNLVELKVANNHLSGKIPSEIGLLQALNHLHLGGNDLIGSIPGQVVQLPNLLELNLSNNKLGGSIPSDFKSLQPLYSLDLSGNLLNGAIPRVLGELQHLKCLNLSRNNLSGNIPSSFNGMSALNSVNISYNQLDGPLPDNKAFLHASIESLKNNKGLCGNVTGLVPCPNSSPSGKSHKVVLLVLLVIFGVLALALSVIAVSVYILCRRARKKEDPAKEMQPEEHFSIWSRDRKMTFKTITEATNNFDDKYLIGIGGQGSVYRAELPSGMVVAVKKLRLESDAEDKYNSKAFENEIKALTEMRRVNAVKGVANALSYMHHGCVPPIVHRDISSKNILLDSEYEAHVSDFGTAKFLKPDSNWTTLAVLTYGYGAPELVQTMEVTEKCDVYSFGVLCFEILMGKHPADLISSLLSPSTASITYNLLLVDVIDQRPPHPEKSVVGEIMLITKWALECLSQSPQFRPSMHQVSKELMDGKAPFDDDHFPMIRLGQLNEELESPLM 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31102g00001 1025 FunFam MDIS1-interacting receptor like kinase 2 isoform A 279 378 - -
Stsc31102g00001 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 381 696 - -
Stsc31102g00001 1025 SMART LRR_sd22_2 261 287 - -
Stsc31102g00001 1025 SMART LRR_sd22_2 597 623 - -
Stsc31102g00001 1025 SMART LRR_sd22_2 213 239 - -
Stsc31102g00001 1025 SMART LRR_sd22_2 357 383 - -
Stsc31102g00001 1025 PANTHER LEUCINE RICH REPEAT KINASE 2 331 831 - -
Stsc31102g00001 1025 Pfam Leucine rich repeat 600 658 IPR001611 GO:0005515
Stsc31102g00001 1025 Pfam Leucine rich repeat 214 274 IPR001611 GO:0005515
Stsc31102g00001 1025 Pfam Protein kinase domain 823 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31102g00001 1025 FunFam Nuclear pore complex protein NUP107 24 182 - -
Stsc31102g00001 1025 SMART LRR_typ_2 165 189 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 621 644 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 573 596 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 261 284 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 333 357 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 525 549 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 237 260 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 92 116 IPR003591 -
Stsc31102g00001 1025 SMART LRR_typ_2 285 309 IPR003591 -
Stsc31102g00001 1025 ProSiteProfiles Protein kinase domain profile. 702 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31102g00001 1025 FunFam Predicted protein 183 278 - -
Stsc31102g00001 1025 SUPERFAMILY RNI-like 350 663 - -
Stsc31102g00001 1025 SUPERFAMILY Protein kinase-like (PK-like) 748 996 IPR011009 -
Stsc31102g00001 1025 Gene3D Ribonuclease Inhibitor 278 378 IPR032675 -
Stsc31102g00001 1025 Gene3D Ribonuclease Inhibitor 389 695 IPR032675 -
Stsc31102g00001 1025 Gene3D Transferase(Phosphotransferase) domain 1 829 1008 - -
Stsc31102g00001 1025 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Stsc31102g00001 1025 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Stsc31102g00001 1025 Gene3D Ribonuclease Inhibitor 182 277 IPR032675 -
Stsc31102g00001 1025 SUPERFAMILY RNI-like 73 391 - -
Stsc31102g00001 1025 ProSitePatterns Tyrosine protein kinases specific active-site signature. 850 862 IPR008266 GO:0004672|GO:0006468
Stsc31102g00001 1025 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515
Stsc31102g00001 1025 Pfam Leucine Rich Repeat 575 597 IPR001611 GO:0005515
Stsc31102g00001 1025 Gene3D Transferase(Phosphotransferase) domain 1 746 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31102g00001 Stsc-Chr31102 9613 12969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31102g00001 19 898 Receptor kinase-like Gene Family AT4G08850 41.471 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc31102g00001 Pkinase 4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31102g00001 - - aip:107635237 1291.95