Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31100g00001 ATGGAGGAAGCACTCAGGCGCCTCAACGGCATGCCCCCCTTTGACGAACCACCTCCCAACAACTCCAAAACCTCCTCTTCTTCCACTCTCCCTACCAAGCGCACCCTCCGAGACACCACCACTCCCCCCACCCCCGCACCCATGAGGTACCGCGGCGTCAGGCGCAGGCCATGGGGCCGTTACGCCGCCGAGATTAGGGACCCTCAGTCCAAGGAGCGCCGTTGGCTCGGCACTTTTGACACCGCCGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGTGGCCTTAAGGCCAGGACCAACTTTGTCTACCCTACTTCTCCTCCTCACCCTTCTTCCATCGCCCTCGCCAACAACCCTAACAACCTCCTTAACCGCCACAACCACCTCTTCACTCATCACCACTTCACCTTCCCTAATCATAATAACCAACTCTTCAACGCCCATAACCGCCAGTTTGGTGGTTATTGGTCTGACCCCTTCTCTTCTTCAACCTTCCAACAACAGCAAAACCTTGACTCCATCAACATGCTTCTCCTCCGCGACTTCATAGCCTCTTCTTCCCCCGACCACCATTTATCCTACACCAGGGGTAGTTTTGTCAATTCACATCCTTCTGGCAATGTTGCTTGTTCTGACACAAGCAATCTCTGTTGTGGCGGTGGAAGCAACAACACCGATAACACTAATAATAATAATAACAATAATAATGAAGCTGATCGTGGTGGCGAAGAAGAAGACTCAAAGGAGCAATTCTTTGAAGGTTCAGAGTCATCAGGGTTGTTGGAAGAAGTAGTTAATGGTTTCTTGAGGAAAAAGCCAAAGCCTAACAAATTCGAGAGGTTTTCAGATGGTTCTTGCCACTCCTCATTTCCTCCACCTCTTCCTCCTCCTCCCCCACCTCCTCCTCTGCCTTTCTCCGGCGAGTCGAAGAAAAACGAGGGTTTCGGCGTTCATTTGGATCAACAGGGTTTCCAATACATGCAGCAGCTTGGTGGAGGTTTCAATAATGGTTTTAGCAATATGGTTATGCAGCAGCCTAACATAGCTCTTCAAGAAAATAACAACCAAATCATGACGATGATGATGATGATTAACAGTGATCCTAATCACGCAGAAGCAGATTTCTCTACCGTAGAAAACACTCTTCATCAGGATGCAAAATTCTGA 1179 0.5021 MEEALRRLNGMPPFDEPPPNNSKTSSSSTLPTKRTLRDTTTPPTPAPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHPSSIALANNPNNLLNRHNHLFTHHHFTFPNHNNQLFNAHNRQFGGYWSDPFSSSTFQQQQNLDSINMLLLRDFIASSSPDHHLSYTRGSFVNSHPSGNVACSDTSNLCCGGGSNNTDNTNNNNNNNNEADRGGEEEDSKEQFFEGSESSGLLEEVVNGFLRKKPKPNKFERFSDGSCHSSFPPPLPPPPPPPPLPFSGESKKNEGFGVHLDQQGFQYMQQLGGGFNNGFSNMVMQQPNIALQENNNQIMTMMMMINSDPNHAEADFSTVENTLHQDAKF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31100g00001 392 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Stsc31100g00001 392 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 242 256 - -
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 1 53 - -
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 226 241 - -
Stsc31100g00001 392 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Stsc31100g00001 392 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Stsc31100g00001 392 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Stsc31100g00001 392 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 252 - -
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 20 42 - -
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 277 316 - -
Stsc31100g00001 392 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 226 261 - -
Stsc31100g00001 392 MobiDBLite consensus disorder prediction 293 310 - -
Stsc31100g00001 392 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Stsc31100g00001 392 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Stsc31100g00001 392 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31100g00001 Stsc-Chr31100 5212 6390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31100g00001 1 349 AP2-EREBP Transcription Factor Family AT1G24590 34.748 2.46e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc31100g00001 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31100g00001 - - aip:107639893 418.698