Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31098g00001 ATGGGGAGGGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAGTCATACATAGAACAACATGGCACTGGTGGTAATTGGATTGCTTTGCCTCAAAAAATTGGATTGAAGCGTTGTGGAAAGAGTTGCCGTCTAAGGTGGCTGAACTATCTTCGCCCTAATCTCAAGCATGGTGGTTTCTCTGAAGAGGAAGACAACATTATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAGTTATTGCTGCTCAATTGCCAGGAAGAACTGATAATGACATAAAAAACTATTGGAACACAAGGCTCAAAAAGAAGCTTCTTGGGAATAACAGGAACCGCCGCAACAAAGAACAGCAACAGTTTCAACCATGTAGCAACAATAATCAAGAAGAAACAACATCAATTAATAGAGGGAGGAGTAGTCCTAGTGTTATTTTTGGTCATGATGATTCCTTATTGGTTCATGAAAATAATAGTACTATTCAACAACAGCAACAATGTTATTGGCCACACTTCATGCCAGTGTTGCCAATACCAAATGTGCCATATAGCACATCAAATAACCATTTCTTATTAGGATCTTCTTTCAATGACCAAGATTCCATCAAGAAACTACTTATCAAGCTTGGAGGGAGATTCTATAATAATGGTGTTGATTATCATAATTACCATCCTACCCTTGATGATGGATTGAATCATCTTCTTCATCAATCACAAGGACAAGGACAAGGTATTATTACTACTACTCATTCTAATAATAATAATTCAACACAACAAGAAGTAGTTTATCATCAAGAACAAGTACAATTTGGTGATGGTAATAATGGTGGTCTTCATGATGAATTGGTGCAAAGGCAAGGAAATTTCAACATTGAAATTGAAGAAGAAATGGTGGGTACTAATACTAATAATAATTTTATTCCACAAAGATTATTATTAAATAATAATGGGTTGGAGTTCTTATGTGGAGACATGGCTTTTAGTGATAAGATCATACTAGGCTCTACTAATAGGGTTAATTGGGGTGAGAGTAGTAATAGTGGCAATTCAGTAATTTACCAACAACCTCTTCTTGCTTCTTCAAATTACCAACAAGATCAAGGTGTAAGGCCATCAGAAGAATGTGCTTTGCAAGAGTATAGCACTACTATAGCTACCATGAGAAGCAATAATAGCAATACCATGCTTCATGTTTAG 1230 0.3699 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGNNRNRRNKEQQQFQPCSNNNQEETTSINRGRSSPSVIFGHDDSLLVHENNSTIQQQQQCYWPHFMPVLPIPNVPYSTSNNHFLLGSSFNDQDSIKKLLIKLGGRFYNNGVDYHNYHPTLDDGLNHLLHQSQGQGQGIITTTHSNNNNSTQQEVVYHQEQVQFGDGNNGGLHDELVQRQGNFNIEIEEEMVGTNTNNNFIPQRLLLNNNGLEFLCGDMAFSDKIILGSTNRVNWGESSNSGNSVIYQQPLLASSNYQQDQGVRPSEECALQEYSTTIATMRSNNSNTMLHV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31098g00001 409 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc31098g00001 409 Gene3D - 70 145 - -
Stsc31098g00001 409 CDD SANT 71 113 IPR001005 -
Stsc31098g00001 409 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc31098g00001 409 PANTHER OS09G0431300 PROTEIN 1 291 - -
Stsc31098g00001 409 SMART sant 13 64 IPR001005 -
Stsc31098g00001 409 SMART sant 67 115 IPR001005 -
Stsc31098g00001 409 MobiDBLite consensus disorder prediction 119 151 - -
Stsc31098g00001 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc31098g00001 409 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc31098g00001 409 CDD SANT 16 62 IPR001005 -
Stsc31098g00001 409 Gene3D - 7 68 - -
Stsc31098g00001 409 MobiDBLite consensus disorder prediction 124 151 - -
Stsc31098g00001 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc31098g00001 409 FunFam Transcription factor MYB36 70 142 - -
Stsc31098g00001 409 FunFam Transcription factor RAX3 7 68 - -
Stsc31098g00001 409 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc31098g00001 409 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31098g00001 Stsc-Chr31098 67 2316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31098g00001 1 252 MYB Transcription Factor Family AT3G49690 54.762 1.01e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31098g00001 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31098g00001 K09422 - gmx:100800290 342.428