Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31094g00001 ATGGGAACACTTCCTTCAGTACCAGGATCTCCTTTGTTGAACACACAAGTACTTAGGAGGTACAAATCGCCATCCACTTTTGTGGTTCCTAAATACTCTCTTACATTCACTCGGATTTGTTGCAAGAAGCTATCAGAAAGTGGCATTGATGAGAAGGAAAAACCCTCCACCAGCAACAATAACACTGCCTCTAAATCCAAGGACAGAATGGAAGATTACAATACTGCTATGAAGAGAATGATGAGGAACCCATATGAATATCACCATGATCTGGGTATGAATTACACACTTATAATGGACAATCTTATTGTGGGATCCCAACCACAGAAACCTGAAGACATAGATCACCTCAAGAAGGAAGAGGGCGTGGCATACATTCTGAACTTGCAGCAGGATAAGGATGTCGAATATTGGGGAATAGACTTGAAGTCGATAACAAGGAGGTGTCACGAACTCGAAGTTCGACATATGAGGAGGCCGGCAATTGACTTTGATCCAAACTCCTTGCGAAATGTTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCGGAGGGAAAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTTGGGAGAGCTCCCGCAGTGGCAATAGCTTATTTGTTCTGGTTCTGCGACATGAATCTAAATACTGCATATGAGTTGTTAACTTCAAAGAGACCATGTGGACCTAATAAAAGAGCAATACGAGGAGCTACCTATGATTTGGCCAAGAATGATCCATGGAAGGAGCCATTTGAGTCTCTTCCAAATCATGCATTTGAGGATATAGCAGACTGGGAGAGGAAATTGATTCAAGACCGCATTCGCTCCCTTTGTGGAACTTGA 855 0.4281 MGTLPSVPGSPLLNTQVLRRYKSPSTFVVPKYSLTFTRICCKKLSESGIDEKEKPSTSNNNTASKSKDRMEDYNTAMKRMMRNPYEYHHDLGMNYTLIMDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGIDLKSITRRCHELEVRHMRRPAIDFDPNSLRNVLPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLFWFCDMNLNTAYELLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFESLPNHAFEDIADWERKLIQDRIRSLCGT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31094g00001 284 CDD DSP_laforin-like 93 240 IPR045204 GO:0019203
Stsc31094g00001 284 Gene3D Protein tyrosine phosphatase superfamily 77 284 IPR029021 -
Stsc31094g00001 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 251 IPR020422 GO:0006470|GO:0008138
Stsc31094g00001 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 236 IPR029021 -
Stsc31094g00001 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 230 IPR000387 GO:0016311|GO:0016791
Stsc31094g00001 284 MobiDBLite consensus disorder prediction 49 69 - -
Stsc31094g00001 284 SMART dsp_5 94 244 IPR020422 GO:0006470|GO:0008138
Stsc31094g00001 284 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 38 252 - -
Stsc31094g00001 284 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 77 284 - -
Stsc31094g00001 284 Pfam Dual specificity phosphatase, catalytic domain 115 234 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31094g00001 Stsc-Chr31094 5572 8907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31094g00001 53 284 Protein tyrosine phosphatase (PTP) family AT3G10940 80.603 1.67e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31094g00001 - - gmx:100787079 441.425