Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31087g00002 ATGCTAGAATCGGAGCTTCACGATTTATCGGACGACGCCGATTACGCCGCTTCGCAGCAACAGGGTTCTGCTAGCGTCATGCTGCGAAGCGATAGTGTTAAGCTGAGCTCGCCTCGTGAGCACGACGATGCTGAGGTTGTGTTTTCGAAGGACAATGTGGCAATTCATCCAACGCAGTTTGCATCGGAAAGAATTAGTGGAAGACTGAAGCTGATTAAGCAAGGCTCTTCGTTGTTCATGACTTGGGTTCCTTACAAAGGCCATAGCTCAGAGGCGAACATTTCCGAGAAAGATAGAAGCCTTTACACCATAAGAGCGGTGCCTTTCACTGACATTAGGTCCATCCGGAGGCATACGCCTGCACTTGGTTGGCAATATATCATTGTTGTTCTATCATCAGGACTTGCTTATCCTCCACTGTACTTTTATAGTGGAGGAGTCAAAGAATTCCTTGCTACAATCAAGCAAAATGTTCTTCTTGTGAGATCTGCTGAAGATGCAAATGTGTTCCGTGTGAATGATTTTCAGAATACTCTGCAGAGAACTTTGTCTTCGTTGGAGCTTCCAAGGGCTGTTTCTGTTGCATGTGGACCTTCAAACGTGTCAATTGATGAACCAAATTCACCAAGTTTCAATGAGAACCAAGAAAGGACCAATAGTGGTGCCAATAATCTAAGTGCCAGTGTTCCTCAATTCCATGGTAGACCAAAGCATAAAGTTAATGATCCTCGGGACATTTCTATTCAAGTTTTAGAGAAGTTTTCTCTTGTAACAAGATTTGCTCGTGAAACAACATCTCAACTCTTTGGTGAAAACCAGAATAATGGGTTCAGTGGCTATGAGAGGAGAACCCGTATCCAGCCTAACCTTGATCAGCCAAAGAAATCTACTGATATTGCTGAAAAGGTTCCTGCTGAAAATCCTGTTATTCCAGATCCCAAGCCGCTGGATAAATTATCACTGGTATGGGGAAAACCACGTCAAGCCCCCTTGGATTCTCCAGAGTGGTTGGATTTCTTGGATGCTGAAGGGAGAGTGACAGACTCTGAAGCTTTGAGAAAGAGAATATTTTATGGTGGACTTGAGCACAATTTACGAAAAGAGGTTTGGGGTTTGATTTTGGGATACTACGCATATGACTCAACATATGCTGAGAGAGAATTTCTGAAGTCAGTTAAGAAGTCAGAGTATGAAACTATAAAGAACCAGTGGCAGAGTATCTCCAAGGCACAGGCTAAAAGATTTACAAAATTCAGGGAAAGGAAAGGTCTTATTGAGAAAGATGTGGTGAGAACTGATAGATCGCTCGATTTCTATGAAGGGGATGATAATCCAAATATCACCGTTATGCGTGATATCTTGTTGACATATTCATTCTACAACTTCGATCTAGGTTATTGTCAGGGAATGAGTGATCTTCTGGCTCCAATATTGTTTGTGATGGGCGATGAATCAGAGGCATTTTGGTGTTTTTTGGTGGAGCTACTGGATTGTCCATTGCACAACTATTTCAAGCAGCATGACTGCTTGAATTATTTCTTCTGTTTTCGTTGGGTTTTGATCCAATTTAAAAGGGAGTTTGAGTTTGAAAAAACAATGCGGTTGTGGGAAGTGTTGTGGACACACTACCCATCTGAGCATCTGCACCTGTATGTGTGTGTGGCTATCTTGAAACAATACCGTAATAAGATAATGGGGGAAGGAATGGACTTCGACAACCTTCTCAAGTTTATAAATGAGCTTAGCGGTCAAATTGACCTCGATGCAAGCCTCAGGGATGCGGAGGCTCTCTGCATATGTGCCGGTGAGAATGGTGCAGCTTGTATCCCGCCTGGAACCCCACCATCCTTGCCCATTGATGACGGTTCTTTCTATAACCAGCTAGAAGATGAAATTCTGTGGGAGCTTCAACTTGGTCTCCCTCTTCCAACCAATCATCATCAACTGGAGGAGGAGGAGCAAGAGCAAGAGGAGAAGGTTACAACAACACTCTCTCTCCTTCCATTAACCCCTGATGCCCACCCTATCATCAAGAGGGAAAGAAGTGAAAGCGGTGAGAATGAGGTGGTGGGTTGGCCTCCCCTGGCGAATAAGAAAGTGGTGGTGCGTAGTAGTAGTAATAGGGGGATGTACGTGAAGGTGAAGATGGAAGGTGTAGGGATTGGAAGAAAGGTTGACCTGAGCACGCACCATTCATTCCACACCCTAAACCATGCCTTGCTTCACATGTTTGGAAAATCACATCATCGCCAATCATATCACCTCGCTTATCAGGACCAACATGGCCAATGGCTTCTCGCCAAACATGTCCCATGGACTACTTTCCTCAACTCTGCACACCGTCTCAAACTTCTCAGGACTACCACCACCACCCCTTAA 2379 0.4435 MLESELHDLSDDADYAASQQQGSASVMLRSDSVKLSSPREHDDAEVVFSKDNVAIHPTQFASERISGRLKLIKQGSSLFMTWVPYKGHSSEANISEKDRSLYTIRAVPFTDIRSIRRHTPALGWQYIIVVLSSGLAYPPLYFYSGGVKEFLATIKQNVLLVRSAEDANVFRVNDFQNTLQRTLSSLELPRAVSVACGPSNVSIDEPNSPSFNENQERTNSGANNLSASVPQFHGRPKHKVNDPRDISIQVLEKFSLVTRFARETTSQLFGENQNNGFSGYERRTRIQPNLDQPKKSTDIAEKVPAENPVIPDPKPLDKLSLVWGKPRQAPLDSPEWLDFLDAEGRVTDSEALRKRIFYGGLEHNLRKEVWGLILGYYAYDSTYAEREFLKSVKKSEYETIKNQWQSISKAQAKRFTKFRERKGLIEKDVVRTDRSLDFYEGDDNPNITVMRDILLTYSFYNFDLGYCQGMSDLLAPILFVMGDESEAFWCFLVELLDCPLHNYFKQHDCLNYFFCFRWVLIQFKREFEFEKTMRLWEVLWTHYPSEHLHLYVCVAILKQYRNKIMGEGMDFDNLLKFINELSGQIDLDASLRDAEALCICAGENGAACIPPGTPPSLPIDDGSFYNQLEDEILWELQLGLPLPTNHHQLEEEEQEQEEKVTTTLSLLPLTPDAHPIIKRERSESGENEVVGWPPLANKKVVVRSSSNRGMYVKVKMEGVGIGRKVDLSTHHSFHTLNHALLHMFGKSHHRQSYHLAYQDQHGQWLLAKHVPWTTFLNSAHRLKLLRTTTTTP 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31087g00002 792 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 492 598 IPR035969 -
Stsc31087g00002 792 Pfam Rab-GTPase-TBC domain 364 491 IPR000195 -
Stsc31087g00002 792 Pfam Rab-GTPase-TBC domain 493 565 IPR000195 -
Stsc31087g00002 792 MobiDBLite consensus disorder prediction 201 241 - -
Stsc31087g00002 792 Gene3D - 39 181 - -
Stsc31087g00002 792 ProSiteProfiles TBC/rab GAP domain profile. 360 601 IPR000195 -
Stsc31087g00002 792 Gene3D - 493 601 - -
Stsc31087g00002 792 ProSiteProfiles PB1 domain profile. 709 789 IPR000270 GO:0005515
Stsc31087g00002 792 SMART tbc_4 357 568 IPR000195 -
Stsc31087g00002 792 Gene3D - 703 791 - -
Stsc31087g00002 792 FunFam TBC1 domain family member 15 489 606 - -
Stsc31087g00002 792 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 324 579 - -
Stsc31087g00002 792 Pfam AUX/IAA family 751 788 IPR033389 -
Stsc31087g00002 792 Pfam AUX/IAA family 665 746 IPR033389 -
Stsc31087g00002 792 Pfam Rab-binding domain (RBD) 94 187 IPR021935 -
Stsc31087g00002 792 SUPERFAMILY CAD & PB1 domains 705 783 - -
Stsc31087g00002 792 MobiDBLite consensus disorder prediction 201 230 - -
Stsc31087g00002 792 FunFam TBC1 domain family member 15 383 497 - -
Stsc31087g00002 792 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 335 514 IPR035969 -
Stsc31087g00002 792 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 382 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31087g00002 Stsc-Chr31087 14149 22815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31087g00002 641 782 B3 DNA Binding Superfamily AT1G34410 27.329 1.89e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc31087g00002 RabGAP-TBC 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31087g00002 K20168 - gmx:100803563 1035.79