Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31077g00002 ATGGGAGAGCCAAGAACACCAAGCTCTGAAACAGAAACTGAAAGAAGCACTACCACATGTGCTTCTGCTTCACCACCATCAACACCAACTCCCACATCGAAAAAGAATAATAAAAGATCAAGGCAGCAAAATAATAATGATAACGATAATGGTGGTGCTAGCAAGCACCCGGTATACAGAGGAGTCAGAATGCGCACGTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCACGCAAGAAGAGCCGCATCTGGCTCGGAACCTTCGCCACCGCCGACATGGCAGCGCGTGCTCACGACGCCGCCGCTCTCACCATCAAAGGCTCCTCCGCCATCCTCAACTTCCCCCAACTCGCCCACACTCTCCCCCGCCCCGCCTCCAACTCCCCCCGCGACGTCCAGGCCGCCGCCGCCAAAGCCGCCGCTATGATTATCCCCCCTCCTTCTTCTCCTTCTTCCACCAGCACCACCGCCGCCGCGGCCTCCGAGGAGGAGGAGGAGGATGAGCTCGGGGAGATCGTGGAGCTTCCTCCACTTGGAAACAGCTTCGAAGTAGTTGAAGATCCGAGTGGAGGAATGATGAAGGATGTTGATGAGTTGGTGTTCTTTGATCCGTTATTAGATGGTAACTGTTTCTGTTACCCTTGGAATCAGGGAAGCATTTATGATGACGATCATCATCATCATGATTGTGATGATAGCTTCTTCATTAATAATAACAATAATGATGATAACAGTAATAACAGCAGCATCATGATGTCAATGCTGCTTGAATCACCAGATTCTCTTCTTCCTTCTTCTTCTTCTCATTCTATTTCTAATAATTCTAATTCTTCTTCTTCTTCTGACTTTCAATTTTCTCTCTGGCAACATTAA 873 0.4914 MGEPRTPSSETETERSTTTCASASPPSTPTPTSKKNNKRSRQQNNNDNDNGGASKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATADMAARAHDAAALTIKGSSAILNFPQLAHTLPRPASNSPRDVQAAAAKAAAMIIPPPSSPSSTSTTAAAASEEEEEDELGEIVELPPLGNSFEVVEDPSGGMMKDVDELVFFDPLLDGNCFCYPWNQGSIYDDDHHHHDCDDSFFINNNNNDDNSNNSSIMMSMLLESPDSLLPSSSSHSISNNSNSSSSSDFQFSLWQH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31077g00002 290 MobiDBLite consensus disorder prediction 11 52 - -
Stsc31077g00002 290 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Stsc31077g00002 290 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 MobiDBLite consensus disorder prediction 122 186 - -
Stsc31077g00002 290 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 MobiDBLite consensus disorder prediction 1 60 - -
Stsc31077g00002 290 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Stsc31077g00002 290 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 224 - -
Stsc31077g00002 290 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Stsc31077g00002 290 FunFam Ethylene-responsive transcription factor 2 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31077g00002 Stsc-Chr31077 11918 12991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31077g00002 34 234 AP2-EREBP Transcription Factor Family AT5G11590 48.826 7.30e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc31077g00002 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31077g00002 K09286 - gmx:100784134 177.178