Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31060g00002 ATGGTTTTGTTACTTGGAGCTTGTCCAGATACCGGTTGCCTTGTTTATGAATACATGGACAATGGAAGTCTAGAAGACTATATTTTCAATAGAAATGGGAAACAGCCTCTTCCTTGGTTTACTCGATTCCATATTGTTTTTGAGATGGCATGTGCCCTCTCATTCTTACATAACACAAAGCCAGAGCCGATTGTTCATCGAGATATCAAACCTGGCAATATCTTGTTAAACAGAAATTATGTGAGCAAAATTGCTGACGTAGGGCTGGCTAAACTCCTTTCAGATGTCGTGCCTGACAATGTCACAGAGTACAGAGACTCCATGCTTGCTGGTACTCTCCATTACATGGATCCAGAGTACCAGAGAACTGGCACAGTCCGAACAAAATCAGATGTATATGCTTTTGGACTTATAACTCTTCAGTTGATAACTTCTCGTCATGCACGTGGACTCATTTTGGCTGTTGAAGATGCAGTTACAAAGGGCTCCCTTGGTGATATTTTAGACAAAGCAGCCGGTGATTGGCCACTCAATGAAACATTGGAATTGGCCCAGATTGCTCTTAAATGTGTTGCACTTAGATGTAGGGATAGACCTGATCTTAACACTGAAGTTCTTCCACAGCTTGAAAGACTTTCTGTTGTGGCAGATGCAGGTGCAAGGATAGGAAGAAAAAAGAGTATAGGCACACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATAATGGAAAATCCGCATGTGGCCGCGGACGGTTTCACTTATGAGTACAGAGCAATCAAAGCATGGCTTAGCAGACACAATGTGTCACCTGTGACAAAACGTAAACTCAGAAATCCTATGTTGATTCCCAACCACACTTTACGTTCTGCCATTCAAGAGTGGAAGTCAGGAGTGTCCTTATTTGATTAA 912 0.4211 MVLLLGACPDTGCLVYEYMDNGSLEDYIFNRNGKQPLPWFTRFHIVFEMACALSFLHNTKPEPIVHRDIKPGNILLNRNYVSKIADVGLAKLLSDVVPDNVTEYRDSMLAGTLHYMDPEYQRTGTVRTKSDVYAFGLITLQLITSRHARGLILAVEDAVTKGSLGDILDKAAGDWPLNETLELAQIALKCVALRCRDRPDLNTEVLPQLERLSVVADAGARIGRKKSIGTPSQYYCPILQEIMENPHVAADGFTYEYRAIKAWLSRHNVSPVTKRKLRNPMLIPNHTLRSAIQEWKSGVSLFD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31060g00002 303 Pfam Protein tyrosine and serine/threonine kinase 2 202 IPR001245 GO:0004672|GO:0006468
Stsc31060g00002 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 300 IPR013083 -
Stsc31060g00002 303 Pfam U-box domain 231 296 IPR003613 GO:0004842|GO:0016567
Stsc31060g00002 303 SMART serkin_6 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31060g00002 303 ProSiteProfiles U-box domain profile. 229 302 IPR003613 GO:0004842|GO:0016567
Stsc31060g00002 303 PANTHER OS02G0152300 PROTEIN 1 294 - -
Stsc31060g00002 303 Gene3D Transferase(Phosphotransferase) domain 1 1 226 - -
Stsc31060g00002 303 SUPERFAMILY Protein kinase-like (PK-like) 3 202 IPR011009 -
Stsc31060g00002 303 SUPERFAMILY RING/U-box 229 296 - -
Stsc31060g00002 303 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31060g00002 303 CDD RING-Ubox_WDSUB1-like 231 285 - -
Stsc31060g00002 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 64 76 IPR008271 GO:0004672|GO:0006468
Stsc31060g00002 303 SMART Ubox_2 233 295 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31060g00002 Stsc-Chr31060 3930 5331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31060g00002 1 301 U-box Gene Family AT2G19410 66.225 2.07e-150 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc31060g00002 PK_Tyr_Ser-Thr 2.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31060g00002 - - gmx:100805896 499.204