Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31057g00003 ATGTTAACATGGATGAGTACCCTGCCACCACTGACCTTCACATGTGTGAACATGATAGCACGTTTGTTCAACGCTGAAATTGGAGAAAATGAGAATGCAGTTGGAACAGGAACTGTTGGATCTTCAGAGGCCATAATGCTGGCAGGCCTTGCTTTCAAGAAAAATTGGCAGAACAAGAGAAAGGCCCAAGGAAAGCCCTATCATAAGCCCAACATAGTCACTGGTGCCAATGTCCAGGTATGTTGGGAGAAATTTGCAATGTATTTCGATGTAGAGTTGAGAAAAGTGGAAGTGAGAGAAGGATACTATGTGATGGACCCAAATAAGGCTGTTGAAATGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCTACTTATAATGGAGAATTTGAAGATGTCAAGTTGCTTAACCACCTCTTACTACAACAAAACAACAAAAATGGATGGGAAACACCCATTCATGTTGATGCAGCAAGTGGTGGGTTTGTTGCTCCATTTCTTTATCCAGAGCTAGAATGGGATTTCAGGCTTCCATTGGTGAAGAGCATAAATGTCAGTGGCCACAAGTATGGTCTTGTTTATGCTGGCATTGGCTGGGTTATATGGAGAACTAAACAAGACTTGCCTCAAGAACTTATCTTCCATATTAATTACCTTGGAGCAGAACAACCCACCTTTACCCTTAATTTTTCTAAAGGGTCTAGTCAGATTGTTGCACAATATTATCAATTAATTCGCCTTGGTAGAGAGGGATACCAAAGAGTAATGGAAAAATGCAAAGAAAATGCAATGGTGGTGAAACAAGGATTGGAGAAGACAGGATGTTTTAACATACTCTCAAAGGACAACGGTGTTCCTATGGTAGCCTTTTCACTTAAGGACCGAAGTCGTCATGGCGGCGACGAGTTCAAGATATCCAACATGCTACATCACCACCATGGTTGGGTCGTGCCAGCATATCCGATGCCATCCGGTGCGGAGCACATCACGGTGCTCCGAGTGGTGGCCAGGGCTGAGTTTTCGCGTGAAATGGCCGAAAAACTCGTGCTTGACATGAAAAATGTGTTGCATGAACTTGGGAAGATTGATCCCGCATCAAAAGTGACCAAAATTAACAAAGAAATTGCTCAAAGAAAAATCATTGTTCCGAAATCCAACCAGAATCACAAAGTCTTGGCAGGATAG 1194 0.4271 MLTWMSTLPPLTFTCVNMIARLFNAEIGENENAVGTGTVGSSEAIMLAGLAFKKNWQNKRKAQGKPYHKPNIVTGANVQVCWEKFAMYFDVELRKVEVREGYYVMDPNKAVEMVDENTICVAAILGSTYNGEFEDVKLLNHLLLQQNNKNGWETPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGAEQPTFTLNFSKGSSQIVAQYYQLIRLGREGYQRVMEKCKENAMVVKQGLEKTGCFNILSKDNGVPMVAFSLKDRSRHGGDEFKISNMLHHHHGWVVPAYPMPSGAEHITVLRVVARAEFSREMAEKLVLDMKNVLHELGKIDPASKVTKINKEIAQRKIIVPKSNQNHKVLAG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31057g00003 397 FunFam Glutamate decarboxylase 7 275 - -
Stsc31057g00003 397 FunFam Glutamate decarboxylase 276 366 - -
Stsc31057g00003 397 SUPERFAMILY PLP-dependent transferases 9 362 IPR015424 -
Stsc31057g00003 397 Pfam Pyridoxal-dependent decarboxylase conserved domain 11 296 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc31057g00003 397 NCBIfam glutamate decarboxylase 11 362 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc31057g00003 397 Gene3D - 276 365 - -
Stsc31057g00003 397 PANTHER GLUTAMATE DECARBOXYLASE 13 380 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc31057g00003 397 Gene3D - 8 275 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31057g00003 Stsc-Chr31057 15055 21123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31057g00003 15 365 Calmodulin-binding Proteins AT2G02010 76.923 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31057g00003 K01580 - gmx:100812201 610.142