Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31051g00005 ATGGAAGTTGTGGTGGCCAAAGCCTTCAAACCAAGCCTAAGGGGAGACCTTATTTTCCACCCACCACTTCCACTCGCCGCCGATAAGTTTCTCTGCTTCAACAACGCCGCCGCCCTTGCCGAAGATTTCTCCGTCGACGATCTCCTTGACTTCTCCCAACAACAACAGGAGGAAAAAGACACCACCTCCGCAACTTCCTCACAGGACCCTACAGAAAACGACGCCAACTCCAACTCCTCCCCCGGCGCCGTACACTCCCACTCCGTTTTCGCCGACGAATTTTCCGTTCCCGACGATGATTTGGCGGAGCTGGAATGGGTTTCTCGCTTTGTGGACGATTCAGTACCGGAGCGCTCTCTCTTGTACCCTGTTCCTTCTGAGACAACAAGGGCCCGGGCCCAACCCCAACCTAAACCGGCCTCACTTGTAACTTCTCTTCCAACTGGTGTACCTGTCAAGCACAGGACCACCAAGACAAGGAAACCGAACACCCGCTTATTACGCCCCTTCATTAGCACCTTGGTCTCGCCTCCCTATTCGCCGTCTCTGTCATCGACGCCGGCGAAGAGAAAGCCCGAGGACCAAGCCTGTGGGTTCCAGTTTCAGCGACGGTGCAGTCATTGCCAAGTTCAGAAAACGCCGCAGTGGAGAGCAGGCCCGATGGGCCCCAAAACACTCTGCAACGCTTGCGGAGTCCGGTACAAGTTGGGCCGGCTTTTTCCAGAGTACAGGCCCGCATGCAGCCCGACGTTCTCAGGTGATATTCACTCAAACAGCCACCGTAAGGTGTTAGAGATGAGGCGTAGGAAGGAGATGTCTAGGCCGGAGCCCGGTCCAGACCGGGCCCACATGTTTCCAAGTTGCTGA 867 0.5606 MEVVVAKAFKPSLRGDLIFHPPLPLAADKFLCFNNAAALAEDFSVDDLLDFSQQQQEEKDTTSATSSQDPTENDANSNSSPGAVHSHSVFADEFSVPDDDLAELEWVSRFVDDSVPERSLLYPVPSETTRARAQPQPKPASLVTSLPTGVPVKHRTTKTRKPNTRLLRPFISTLVSPPYSPSLSSTPAKRKPEDQACGFQFQRRCSHCQVQKTPQWRAGPMGPKTLCNACGVRYKLGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMSRPEPGPDRAHMFPSC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31051g00005 288 MobiDBLite consensus disorder prediction 53 84 - -
Stsc31051g00005 288 Gene3D - 200 274 IPR013088 GO:0006355|GO:0008270
Stsc31051g00005 288 PANTHER GATA TRANSCRIPTION FACTOR 39 281 - -
Stsc31051g00005 288 MobiDBLite consensus disorder prediction 129 143 - -
Stsc31051g00005 288 PIRSF Txn_fac_GATA_plant 8 283 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc31051g00005 288 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Stsc31051g00005 288 FunFam GATA transcription factor 193 279 - -
Stsc31051g00005 288 MobiDBLite consensus disorder prediction 266 288 - -
Stsc31051g00005 288 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Stsc31051g00005 288 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 262 - -
Stsc31051g00005 288 CDD ZnF_GATA 204 261 IPR000679 GO:0006355|GO:0043565
Stsc31051g00005 288 SMART GATA_3 199 253 IPR000679 GO:0006355|GO:0043565
Stsc31051g00005 288 MobiDBLite consensus disorder prediction 126 159 - -
Stsc31051g00005 288 ProSiteProfiles GATA-type zinc finger domain profile. 203 236 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31051g00005 Stsc-Chr31051 23069 24380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31051g00005 6 272 C2C2-Gata Transcription Factor Family AT4G34680 43.796 1.34e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc31051g00005 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31051g00005 - - adu:107476627 428.328