Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31046g00002 ATGGAGAAGTATGAGATTCTACAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTTCTTGTTAGGCACAAGCATGAAAACAGAAAGTATGTTCTCAAGAAGATCAAACTTGCACGCCAAACTGACAGAGCCCGTAGATCTGCTCATCAAGAGATGGAACTCATCTCTAAAGTTCGAAATCCATTTATTGTGGAATATAAAGATTCTTGGGTGGAAAAGGGTTGCTTTGTATGTATCATCATTGGCTATTGTGAAGGTGGAGATATGGCTGAAGCCATAAAAAAGTCTAATGCTGTTCATTTTTCCGAAGAGAAGCTTTGTAAGTGGCTCGTTCAACTGCTGATGGCACTTGATTACTTGCATGCGAATCATATTCTGCACCGTGATGTCAAGTGTTCAAACATATTCTTGACGAAAGATCAAGATATACGTCTAGGTGACTTTGGCCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCTGTTGTGGGGACTCCAAGTTATATGTGTCCCGAGCTTCTTGCTGATATACCTTATGGCTCTAAGTCCGATATCTGGTCTTTAGGATGCTGTGTATATGAAATGGCTGCACATAAGCCAGCTTTCAAAGCTCTGGATATGCAAACATTGATTAATAAAATAAACAAGTCTTTAGTGGCTCCATTACCAACCATGTATTCTAGTCCATTTCGGGGGCTTGTCAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCCGAGTTACTAAATCATCCACATCTTCAGCCTTTTATTCATAAAATTCACCTGAAACTCAATACCCCGAGAAGAAGTACTTTTCCCTTCCAGTGGCATGATTCAAGTTACTTAAGGAGGAACCGCTTTTTTGAGCCAGAATCTGTTTCTACTATCTCAGACAGGCACAAAAGATTGTCCTTAAGCAATGACAGAGCTTTGAATCCTAGTATTTCTGGAACTGAAGCAGGTTCTGTGTGTTCTGCTCAAAGAGCACAAGGATCCTTCACATATTCAAAAGAGAGATTGTATGATCTTTCTGTTGGTTGTGTCCGGGAAGAGTGGAATGCTAACAATGCGAAAGCAGCCAAGTTCTCAGCTTTTGATACGACACCAAGATTGAAAGCGGGGAAGATTTCCACCCCGAGACGGCAGATAATACCGTCGATATCACATACTAGCTCGAAACGTGATTCATTTGCTGCACCAACTCGTCGAGCATCTCTTCCACTTTTTACACCAACCGGAGGCAGGGCAACAGCTACCCGTTACAGAGCCAGCATTGGCCTTCTCAGAAGTGTGGACTCCCCAGATATTTCTGTCAATGCACCACGTATTGACAAGATTGCAGAGTTCCCTCTGGCATATTGCGAGGGCAATCATTTCTTCCCCGTTCGTGGCACCTCATCAACGTCGGCTCATTGCTCGTCCAGCTCCCCAGGCAGCGCAGAATGCTCATTCACAAAAGACAAGTGTACAGTCCAAGTCGTGGACAAGGCCAGTGTCCCTAAAATGACCACTATTGCCAATGATACTTTTTCCAATGGTACTCCAGCTCCGGTTTCGCACGGCAGTGAATGCTCTGAACCCGGGGCGACCATTCTTTCAAGCCATTCCTCGGCCGACTCTCGTCAGCGCAGGTTCGACACCTCGTCGTACCAGCAGCGCGCTGAGGCGTTGGAAGGGTTGCTGGAGTTCAGTGCAAGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGGTGTGTTGTTGAAACCATTTGGACCTGAGAAGGTTTCACCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTCAAAGAAACTGCGTCCTAA 1836 0.4499 MEKYEILQQIGKGSFGSALLVRHKHENRKYVLKKIKLARQTDRARRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKSNAVHFSEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTMYSSPFRGLVKSMLRKNPELRPSAAELLNHPHLQPFIHKIHLKLNTPRRSTFPFQWHDSSYLRRNRFFEPESVSTISDRHKRLSLSNDRALNPSISGTEAGSVCSAQRAQGSFTYSKERLYDLSVGCVREEWNANNAKAAKFSAFDTTPRLKAGKISTPRRQIIPSISHTSSKRDSFAAPTRRASLPLFTPTGGRATATRYRASIGLLRSVDSPDISVNAPRIDKIAEFPLAYCEGNHFFPVRGTSSTSAHCSSSSPGSAECSFTKDKCTVQVVDKASVPKMTTIANDTFSNGTPAPVSHGSECSEPGATILSSHSSADSRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETAS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31046g00002 611 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Stsc31046g00002 611 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc31046g00002 611 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc31046g00002 611 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 567 - -
Stsc31046g00002 611 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Stsc31046g00002 611 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31046g00002 611 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31046g00002 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc31046g00002 611 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Stsc31046g00002 611 MobiDBLite consensus disorder prediction 513 552 - -
Stsc31046g00002 611 CDD STKc_Nek 3 258 - -
Stsc31046g00002 611 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31046g00002 611 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31046g00002 Stsc-Chr31046 7556 13565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31046g00002 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 8.60e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc31046g00002 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31046g00002 K08857 - gmx:100810347 928.317