Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31039g00002 ATGGAGATAATCAGCAGCGCCACTGCAACAACAATAACGAACCCACCAAAATCACCAGAACTCGAATCAGAAACTCCGACCCGGATCCAACCCGCAAACACTAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGCCACCACGCTCCTCCACACTACCACCACCAACTCGCAAGCCCTACCGCCGTCTCCGCCGCCCTGGCGGTTACTTATAAAGAATGCTTGAAGAATCACGCCGCTAGCCTCGGTGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGCCGGCGCCAACCGCCACCGCCGGCGATCCAACTTCCATCAAGTGCGCCGCATGCGGCTGCCATCGCAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCACCACCACTCTCTCCTGTAATCGAGTACCAACCTCACCACCGCCACCACCCTCCACCACCACCTCCGCCACCTCCGTTCCACCATCACCACCACCACCGGAGCCCTAACTCCGCGTCACCACCTCCGATATCGTCTTCCTACTACCCGTCCGCACCTCACATGCTCCTCGCTCTGTCCTCCGGCGGCGGCCTCTCGGTCCCGCCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACTCCCGAAAACGGTTCAGAACGAAGTTCACGCAAGAACAGAAGGAGAAGATGCACGTGTTCGCTGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCGGGAATTTTGCCATGAAATCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTCGGGAAAAGAGAAAGAGAACCAGGTAACGGTAACGGTAACGACAATAAGAATGTTCTAGAAGCTCCTGGAATCAACGGTGGCGATCATCATGATGAAGAAAACAACAATAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGAACATGATGAACGGTGGAGATCATAGCGCTCATGACGATGATGCTAACGGTGCCGGTACAAATGGCTCTTCTTCTTCTTCTTGA 1044 0.5498 MEIISSATATTITNPPKSPELESETPTRIQPANTKPVSFSNGVLKRHHAPPHYHHQLASPTAVSAALAVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPPPLSPVIEYQPHHRHHPPPPPPPPPFHHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIREFCHEIGVDRGVLKVWMHNNKNTFGKREREPGNGNGNDNKNVLEAPGINGGDHHDEENNNNKSNGLNGGMMMNMMNGGDHSAHDDDANGAGTNGSSSSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31039g00002 347 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Stsc31039g00002 347 MobiDBLite consensus disorder prediction 121 175 - -
Stsc31039g00002 347 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
Stsc31039g00002 347 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Stsc31039g00002 347 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 271 - -
Stsc31039g00002 347 FunFam Zinc-finger homeodomain protein 2 201 274 - -
Stsc31039g00002 347 Gene3D - 201 273 - -
Stsc31039g00002 347 MobiDBLite consensus disorder prediction 188 217 - -
Stsc31039g00002 347 MobiDBLite consensus disorder prediction 272 347 - -
Stsc31039g00002 347 MobiDBLite consensus disorder prediction 1 35 - -
Stsc31039g00002 347 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Stsc31039g00002 347 SUPERFAMILY Homeodomain-like 205 274 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31039g00002 Stsc-Chr31039 18407 19450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31039g00002 1 269 ZF-HD Transcription Factor Family AT5G15210 54.275 6.42e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc31039g00002 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31039g00002 - - jre:108985975 311.612