Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31025g00001 ATGGCTGATTCCCTCTTCTGCATCGCAGACTCACTAGTAGCAAAGCTCGCTTCTCATGCATTTACAGAAGCTTCTAGAATTGTTGGTGTCTACAACGACCTGGAAGATATTAATCACACTCTCTCCATCGTTAAGGCTCTGTTGTTGGACGCTGAGCGTAGATGCAGAGTCGACGAGGCCGTCCGCGAATGGCTTCGTCAGCTTCAATGGATCTTCAACGATGCTCAAGACTTGATGGACGAGATTGATTATGCTGCGAAACAAAAGCAAGTTACCAAACTTCATGGAAGTTGTAGCGTCATTACCAAGGTAGGCAGATTCTTATCCTCAAGATCCAATCCTCTTTTCTTCCGATTTAAGATGGCGGAAAGAATTAAACAAGTTAAGGGGATGTTAGATAAGGTTGCTGCTGATAGGGACAGGTTTGGGCTTCGTATGGTTCTTGATGATAACCGTGTTGTGCATACGAGGGAAACAACCCACTCCCATGTGAATGCTTCCGATGTTATTGGAAGGGAGAGTGACAGAGAAAGAATCCTCGAGCTTTTGATGGAAAATGGTTGTAAAAGTGTTCTTTCCATTGTGGGTTTTGCAGGAGTCGGAAAAACCACACTTGCCAAACTTGTGTTCAATGATGTTAGGATAGCCGATTTTTTCACACTAAAAATATGGGTATGTGCTTCTGATTGTTATTGTTATAATCATGATTACGGGGAGTCTTTTAACATTAAGCATGTGATTAGCAAGATCATTGATTCTCTGAATTGTTCAACTTCTGGTGGTTTTGCTAATGCTCTTGGCAAGGTAGACATGGAGGTACTCAAGAATCAGTTGAAAGATAAACTTGGCAATAAGAAGTTCATCCTGATCTTGGATGATGTATCGTTAATAGATCGAATTCAATGGGCTGAACTAAGGGATTTGATTTGGCTAGGTGCAGCTGAAGGAAGCAAAATTCTAGTGACTACACAGAGCTTAAAAGTAGCTTCGATTATGGGTAGCATAAGCCCTCACCATGTTTTGGATTGTCTTTCAGAACAAGATTCATTGTCTTTATTTGTTAAATGGGCATTTAAGGAAGAAGCTGAGAGAAGGTATCCAGATTTGATGGAGATTGCAAAGGATATTACCAAAAAATGTCATGGGAATCCTTTGGCATTGGTCACATTAGCAAGTTCGTTGTTCGGCAACTTCGACAAAGATAAATGGACTCATTTGAGAGATAGTGAGATTTGGAAAGGCAAAGGTCGGCTTAGTTCTTCTGCAGTTGACATTTCTTATGATCAATTGCCATCATATTTAAAGCAATGTTTTGCTCTCTTCTCTCTTTACCCAATCAGTTATGTGTTTGATAGTTTTCATGTTGCTGAGCTTTGGAGTGCACTTGGTCTCCTTCCATTGGAAAACAACAATCAAATACTGAAACATGGTCTTAATCAGTATTTGAATGAACTGCACTCTAGATCTTTTCTTGAAGATTTTGTGGATTATGGAACTGGTTTCACTTTCAAACTCCATGGTCTTGTGCATGATTATGCAAAGTCTGTTGCAAGAACATACTCCCAAATCATAACATCTCCCTATCCAGGATCCGGCCACCACCGGAATATTCGAAATGCTTCTTTCGTAGGTAATGATGTCACTACCATATCACCGACGGCTAGAACCATACTATTTCCCATTGCTGGAGTGGGAGCCAATACTATAGATTTCTTGAATGCATTGGCATCAAGGTGCAAATACTTGCGATTTTTGGATTTGAGTGACTCTACTTATGAAACCTTACCTCAATCCATTGGTAACCTGAAGCATTTAAGATATTTAAGTCTGGAAAATAATAAAAGCTTCAAGAAACTTCCTGATTCTATTTGCAGGCTATACAACTTGGAAGTTTTGATACTTAGTGGATGTACCGAGCTAGAGGCATTCCCTAAAGGCCTAGGAAACTTGATCAGTCTTAGGCATTTGGAGATAACCACAAAACTACATGTTTTGCCAGAGGATGAGATTGCAAGGTTGAGTTCGCTTCTTAATCTCAGAATTGAATCATGCAAAAATCTGAAGTGTTTGTTTGCGAAAACAAGACTCCCAAGTCTTAGAGTATTGGTTGTTTCTGGTTGTAGCACTCTAAGTTCCCTGCCACTTGATACTGAACATTTTCCTCTCTTAGATACTTTGGTAGTTGATAATTGTGACAAGTTAGAATTATCAGAGGGACACAGTGATCGAAATTCCAATTTGAGGTTAAAGGTTCTACACTTTGTATCTTTGCCAAATTTGGTGAGCTTGCCCCAGTGGCTTCAAGGATCTATGAAGACATTACAGTATTTGTTGGTTTCAAGCTGCACGAATGTTGTGGTGCTTCCTGAGTGGCTACCAACCATGGATTGTATAAAAACATTGTACATCACAAACTGTCCTAATTTGTTGTCTCTCCCGAATGACATGCATCGGTTCGCCACCATTGAGTGTTTTGTAATTGATGGTTACCCTGAATTATTCAGAAACTCTCAGCTGCATGTCGGAGAGTGTTCACACCAGCAAACAACCATTGATGAAACAGCAGAAATAGAGGAAGTGGGTTAG 2586 0.4014 MADSLFCIADSLVAKLASHAFTEASRIVGVYNDLEDINHTLSIVKALLLDAERRCRVDEAVREWLRQLQWIFNDAQDLMDEIDYAAKQKQVTKLHGSCSVITKVGRFLSSRSNPLFFRFKMAERIKQVKGMLDKVAADRDRFGLRMVLDDNRVVHTRETTHSHVNASDVIGRESDRERILELLMENGCKSVLSIVGFAGVGKTTLAKLVFNDVRIADFFTLKIWVCASDCYCYNHDYGESFNIKHVISKIIDSLNCSTSGGFANALGKVDMEVLKNQLKDKLGNKKFILILDDVSLIDRIQWAELRDLIWLGAAEGSKILVTTQSLKVASIMGSISPHHVLDCLSEQDSLSLFVKWAFKEEAERRYPDLMEIAKDITKKCHGNPLALVTLASSLFGNFDKDKWTHLRDSEIWKGKGRLSSSAVDISYDQLPSYLKQCFALFSLYPISYVFDSFHVAELWSALGLLPLENNNQILKHGLNQYLNELHSRSFLEDFVDYGTGFTFKLHGLVHDYAKSVARTYSQIITSPYPGSGHHRNIRNASFVGNDVTTISPTARTILFPIAGVGANTIDFLNALASRCKYLRFLDLSDSTYETLPQSIGNLKHLRYLSLENNKSFKKLPDSICRLYNLEVLILSGCTELEAFPKGLGNLISLRHLEITTKLHVLPEDEIARLSSLLNLRIESCKNLKCLFAKTRLPSLRVLVVSGCSTLSSLPLDTEHFPLLDTLVVDNCDKLELSEGHSDRNSNLRLKVLHFVSLPNLVSLPQWLQGSMKTLQYLLVSSCTNVVVLPEWLPTMDCIKTLYITNCPNLLSLPNDMHRFATIECFVIDGYPELFRNSQLHVGECSHQQTTIDETAEIEEVG 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31025g00001 861 Gene3D Ribonuclease Inhibitor 529 695 IPR032675 -
Stsc31025g00001 861 Gene3D Ribonuclease Inhibitor 744 849 IPR032675 -
Stsc31025g00001 861 Coils Coil 359 379 - -
Stsc31025g00001 861 Gene3D - 151 336 IPR027417 -
Stsc31025g00001 861 Gene3D - 9 125 - -
Stsc31025g00001 861 Pfam Rx N-terminal domain 11 95 IPR041118 -
Stsc31025g00001 861 Gene3D - 343 425 IPR042197 -
Stsc31025g00001 861 Pfam NB-ARC domain 173 409 IPR002182 GO:0043531
Stsc31025g00001 861 SUPERFAMILY L domain-like 505 834 - -
Stsc31025g00001 861 Gene3D - 426 516 IPR036388 -
Stsc31025g00001 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 440 IPR027417 -
Stsc31025g00001 861 PRINTS Disease resistance protein signature 281 295 - -
Stsc31025g00001 861 PRINTS Disease resistance protein signature 694 710 - -
Stsc31025g00001 861 PRINTS Disease resistance protein signature 380 394 - -
Stsc31025g00001 861 PRINTS Disease resistance protein signature 191 206 - -
Stsc31025g00001 861 PANTHER DISEASE RESISTANCE PROTEIN RP 50 806 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31025g00001 Stsc-Chr31025 5294 8311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31025g00001 192 396 WRKY Transcription Factor Family AT5G45050 25.854 3.45e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31025g00001 - - gmx:121174109 869.381