Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31023g00005 ATGGAAGGTAGCCATGTCATGCCACTGTTTGTCTTTCTCCTTTTTGGCCTAATTATGGGAATGTGTTATGGTGACACAGACCCAAATGATCTCACAGTTCTGAATTCTTTCAGAAAAGGGTTAGAGAATCCTGAGCTTCTGAAGTGGCCTGAAGATGGAGATGATCCATGTGGCCCTCCTTCATGGCCTTATGTGTTCTGCAATGGTGATAGAGTCACACAGATTCAGGCCAAGAATCTTGGACTCAGAGGAACATTGCCTCCAAACTTCAACCAGCTCTCAGAGCTCTACAATTTGGGCCTTCAAAGGAACAACCTCACTGGGATGTTGCCTAGTTTCAGTGGCTTGTCTAAGTTGGAATTCGCTTTCTTGGATTACAATGCATTTGAAGCAATCCCTTCAGATTTCTTCAATGGACTTACCAGCTTGAGGGTTTTGTCTTTGGAAGAAAATCCATTGAATGGAACTACTGGTTGGTCATTTCCTCTTGATTTGGAAAAATCAGTGCAACTAACCAATCTTTCTCTTGTGAATTGCAATTTGGTTGGACAGTTACCGGATTTTCTAGGCACATTGCCTTCTCTAACGAACCTCAGGCTTTCGGGGAACAGGCTAAATGGTAAGATTCCAGAAACTTTTGCTCAATCTTCTATCCAGGTTCTGTGGTTGAACAATCAAGAAGGTGAAGGGTTAACAGGTCCTATTGATGTTGTTTCTTCAATGATTTTCCTAAGACAGCTTTGGCTACATGGAAATCAGTTCAATGGGAGAATTCCACATGATATTGGAAACCTTACTTCCTTGCAAGAACTCAACCTCAATAGTAATCAGCTTGTTGGCTTGATTCCTGAGTCCCTAGCAGAAATGGAACTTGAGTTGCTGGTGTTGAACAATAACATGTTCATGGGCAACGATCCATGCACTGGACCATGGTTTGGATTGAGCTGCAATTCCAATCACCAGGTAACTAAAATCAACTTGCCGCGGCACGAGCTCAACGGTACTCTTAGTCCCTCACTTGCTAAGTTAGATTCATTACTTGAAATTAGGCTAGAAGGAAATAACATAACTGGCATGGTTCCTAGTAATTTTTCTGAATTGAAATCTTTGAGGTTGTTTGAGTTAAGTGAAAACCATCTTGAGCCCCCATTGCCAAATTTTCAAGATGATGTTAAGGTTGTTGTTGTGGGTAACCCTCTCCTTAATGAAAGTGGAGGAATGTCTCCACCACCTGAAACCTCAGATCCTTCACCAGACAAGCTATCACCCTCTTCATCCTCCTCTCATAATGCACATGATCCTAGTATGAATTCAAGTTCAAATCAGTCTAAATTTGATCATTTCAAAAGATTCAAGACAGTGGCAATTGTGTCTGGAATTTCAGTCTTTGTACTTCTTGTTCCTTTGGTGGTTTTTCTCTTCATCTATTCCAAGAAGAAGAAAAAGGTCTCCTTGGATGCTCCAAGCTCCATTGTGGTGCATCCAAGAGATCCATCTGATAAGGATAATGTGGTTAAAGTCACAGTCTCAGATACCACCACTGGAAGCTTATCAACAAAGGCTGGGACAAGTTCTCTGAGTAACATTAGTGGTGAGACTCAAAACTCTCATATAATTGAAGCTGGAAACCTTGTCATTTCAGTTCAAGTCCTACGCAAGGTTACCAACAATTTCTCTTCAGAAAATGAGTTAGGCCGTGGAGGGTTTGGAACTGTGTACAAGGGTGAACTTGAAGATGGGACTAAAATAGCAGTGAAGAGAATGGAGCATGGTGTTCTCAGCAGCAAGGCATTGGAGGAGTTCCAAGCTGAAATCGCTGTTCTTTCGAAGGTTCGCCACAGACATTTGGTATCCCTTTTGGGGTATTCCATTGAAGGCAATGAGAGGCTTTTGGTTTATGAATATATGCCTCTTGGTGCTCTTAGCCAACATCTTTTCCATTGGAAAACCTTGAATTTGAAACCTTTGTCCTTGTCACAAAGGCTTGCAATAGCTCTAGATGTTGCTAGAGGAATCGAATACCTTCATGGTCTTGCCTGCCAGACCTTCATCCATAGAGACCTCAAGTCTTCTAATATTCTACTTGGTGATGATTTACGCGCAAAAGTTTCGGATTTTGGTCTTGTGAAGCTTGCTCCGGATGGCGAAAAATCTGTGGCAACCAAGCTTGCTGGGACATTTGGATACCTTGCTCCTGAATATGCAGTGATGGGGAAGATCACCACTAAAGTTGATGTGTTCAGCTATGGAGTTGTACTGATAGAACTACTGACTGGACTAACAGCACTCGATGAGAGCCGGCCGGAGGAAAGAAGGTATCTAGTAGAATGGTTTTGGCGAATCAAATCAAACAAAGAGAAGCTCATGGCTGCCATTGATCCTGATTTGGAAGCAACTGATGAGACTTTAGAGAGTATATCCATTGTATCTGAACTCGCGGGACACTGCACTGCAAGGGAGGCACACCACCGGCCGGATATGAGTCATGTAGTGAATGTGCTTGTGGCATTGGTGGAGAAATGGAGACCAGTTGATGATGAGTTAGACTATGAGTCTGGCATTGACTACAGTAGACCACTCCCACAAATGCTGAAGATTTGGAAGGAAGCAGAGAGTGATGAATTTAGCTATGGTGCTAGTACTGAAAACAGTAGAGGAAGTATAGCAGCCAAGCCTTCTGGTTTTGCTGATTCTTTTACTTCTGCTGATGCTAGATGA 2718 0.4264 MEGSHVMPLFVFLLFGLIMGMCYGDTDPNDLTVLNSFRKGLENPELLKWPEDGDDPCGPPSWPYVFCNGDRVTQIQAKNLGLRGTLPPNFNQLSELYNLGLQRNNLTGMLPSFSGLSKLEFAFLDYNAFEAIPSDFFNGLTSLRVLSLEENPLNGTTGWSFPLDLEKSVQLTNLSLVNCNLVGQLPDFLGTLPSLTNLRLSGNRLNGKIPETFAQSSIQVLWLNNQEGEGLTGPIDVVSSMIFLRQLWLHGNQFNGRIPHDIGNLTSLQELNLNSNQLVGLIPESLAEMELELLVLNNNMFMGNDPCTGPWFGLSCNSNHQVTKINLPRHELNGTLSPSLAKLDSLLEIRLEGNNITGMVPSNFSELKSLRLFELSENHLEPPLPNFQDDVKVVVVGNPLLNESGGMSPPPETSDPSPDKLSPSSSSSHNAHDPSMNSSSNQSKFDHFKRFKTVAIVSGISVFVLLVPLVVFLFIYSKKKKKVSLDAPSSIVVHPRDPSDKDNVVKVTVSDTTTGSLSTKAGTSSLSNISGETQNSHIIEAGNLVISVQVLRKVTNNFSSENELGRGGFGTVYKGELEDGTKIAVKRMEHGVLSSKALEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSQHLFHWKTLNLKPLSLSQRLAIALDVARGIEYLHGLACQTFIHRDLKSSNILLGDDLRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLIELLTGLTALDESRPEERRYLVEWFWRIKSNKEKLMAAIDPDLEATDETLESISIVSELAGHCTAREAHHRPDMSHVVNVLVALVEKWRPVDDELDYESGIDYSRPLPQMLKIWKEAESDEFSYGASTENSRGSIAAKPSGFADSFTSADAR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31023g00005 905 MobiDBLite consensus disorder prediction 401 443 - -
Stsc31023g00005 905 SMART LRR_typ_2 140 163 IPR003591 -
Stsc31023g00005 905 SMART LRR_typ_2 192 215 IPR003591 -
Stsc31023g00005 905 SMART LRR_typ_2 93 115 IPR003591 -
Stsc31023g00005 905 SMART LRR_typ_2 343 366 IPR003591 -
Stsc31023g00005 905 SMART LRR_typ_2 265 288 IPR003591 -
Stsc31023g00005 905 SMART LRR_typ_2 116 139 IPR003591 -
Stsc31023g00005 905 MobiDBLite consensus disorder prediction 878 905 - -
Stsc31023g00005 905 Gene3D Ribonuclease Inhibitor 28 305 IPR032675 -
Stsc31023g00005 905 SUPERFAMILY L domain-like 57 385 - -
Stsc31023g00005 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Stsc31023g00005 905 Pfam Protein tyrosine and serine/threonine kinase 561 834 IPR001245 GO:0004672|GO:0006468
Stsc31023g00005 905 ProSiteProfiles Protein kinase domain profile. 558 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31023g00005 905 Gene3D Ribonuclease Inhibitor 306 392 IPR032675 -
Stsc31023g00005 905 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Stsc31023g00005 905 SUPERFAMILY Protein kinase-like (PK-like) 533 842 IPR011009 -
Stsc31023g00005 905 FunFam receptor protein kinase TMK1 636 853 - -
Stsc31023g00005 905 ProSitePatterns Protein kinases ATP-binding region signature. 564 586 IPR017441 GO:0005524
Stsc31023g00005 905 PANTHER OSJNBA0070M12.3 PROTEIN 303 905 - -
Stsc31023g00005 905 MobiDBLite consensus disorder prediction 418 443 - -
Stsc31023g00005 905 FunFam receptor protein kinase TMK1 520 635 - -
Stsc31023g00005 905 Gene3D Phosphorylase Kinase; domain 1 519 635 - -
Stsc31023g00005 905 SMART serkin_6 558 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31023g00005 905 Gene3D Transferase(Phosphotransferase) domain 1 636 851 - -
Stsc31023g00005 905 FunFam Receptor-like kinase TMK4 28 307 - -
Stsc31023g00005 905 CDD STKc_IRAK 564 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31023g00005 Stsc-Chr31023 15968 19076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31023g00005 82 834 Receptor kinase-like Gene Family AT5G07280 33.161 6.71e-78 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc31023g00005 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31023g00005 K00924 - gmx:100785090 1354.35