Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31010g00005 ATGACGACGCTCCAAAACGAAGATCTGGGGCTCTCCCTAAGCTTGAGCTTCTCTCACAACAATAATCGTAATTCAAATCCACCGCAAGTCACATACAAACCCCCTTCTTGGAACAACCAACCCCTCAATTCTTCAGATCGAGATTCGGAGACATGCAGAGGTGTTGAAAACGGATCATTCCTCCTCCGGGGAATCGACGTGAACAGCTTACCCTCCGGCGTCGACTGCGAAGAAGAGGCCGGAGTGTCCTCTCCGAACAGCACGGTTTCCAGCATCAGCGGAAAGAGAAGCAGCGAGAGAGAACAAACTAACGGCGAAGATCACGATTTGGAGAGAGCTTCTTCTAGAGGCATCTCCGACGAAGAAGACGGCGAAACCTCCCGCAAGAAACTTAGGCTCTCTAAGGACCAATCAGCTGTTCTAGAAGAGAGTTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTAGCACTGGCAAAGCAGCTTGGCCTTCGTGCAAGGCAAGTTGAAGTGTGGTTCCAAAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTTGACTGTGAGTTTCTAAAGAGGTGCTGTGAGAATCTGACGGAGGAGAATAGGAGACTACAGAAGGAGGTGCAGGAACTGAGAGCACTGAAACTTTCTCCTCAGTTCTACATGCAGATGACCCCTCCAACTACTCTCACCATGTGCCCTTCGTGTGAGCGCGTCGCTGTTCCCCCTTCACCAATCGATCCATCCGCGCGTCACCATCACATGCCTAGGCCCATTCCAATTGGGCCGTGGCCCACTACCCCAGCTGCTGCTCATAGGCCCTTCGATGCCCTCCGCCCCAGGTCGTGA 858 0.521 MTTLQNEDLGLSLSLSFSHNNNRNSNPPQVTYKPPSWNNQPLNSSDRDSETCRGVENGSFLLRGIDVNSLPSGVDCEEEAGVSSPNSTVSSISGKRSSEREQTNGEDHDLERASSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSPIDPSARHHHMPRPIPIGPWPTTPAAAHRPFDALRPRS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 248 285 - -
Stsc31010g00005 285 PRINTS Lambda-repressor HTH signature 164 180 IPR000047 GO:0003677
Stsc31010g00005 285 PRINTS Lambda-repressor HTH signature 155 164 IPR000047 GO:0003677
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 99 134 - -
Stsc31010g00005 285 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Stsc31010g00005 285 Pfam HD-ZIP protein N terminus 5 98 IPR006712 GO:0005634
Stsc31010g00005 285 Coils Coil 183 220 - -
Stsc31010g00005 285 Gene3D - 132 182 - -
Stsc31010g00005 285 SUPERFAMILY Homeodomain-like 115 185 IPR009057 -
Stsc31010g00005 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 246 - -
Stsc31010g00005 285 SMART HOX_1 126 188 IPR001356 GO:0003677
Stsc31010g00005 285 CDD homeodomain 128 185 IPR001356 GO:0003677
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 73 134 - -
Stsc31010g00005 285 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Stsc31010g00005 285 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 15 48 - -
Stsc31010g00005 285 FunFam Homeobox-leucine zipper protein 18 114 189 - -
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 15 53 - -
Stsc31010g00005 285 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Stsc31010g00005 285 MobiDBLite consensus disorder prediction 81 98 - -
Stsc31010g00005 285 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31010g00005 Stsc-Chr31010 18385 20125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31010g00005 4 285 Homeobox Transcription Factor Family AT5G47370 62.092 1.24e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc31010g00005 HD-ZIP_N 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31010g00005 K09338 - zju:107430326 378.252