Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31010g00001 ATGGAAAACCCTTCCGAGCTGAGTGCCCTGAATCTCATCAAACTTCATCTTCTGGGAGAACTCTCATCACCACTTCCTCACAACTCCTTCTCTTTCCAAACTAACCCTACTACTTCCTCTTCTTCTTCTGCTTCGGTCAACTCCAACGAAATAGTCAACGCACTACAGAGGGGTAAGTCCCCGGCGGAGAAGAAACCTCACTCAACGGCATCTTCGTCCAACCGGAAACCGTCTCTTCAAATCTCTCTCCCTAAGAAAACCGAATGGATCCAATTCGGGGAGAATTCCATGAACACCACCCAACAACAGAAGAAGAAGCACCACTACAGAGGGGTAAGGCAGAGGCCATGGGGAAAGTACGCCGCCGAGATTCGAGATCCTAACAAGCGAGGCTCCAGGGTCTGGCTTGGAACATTCGACACCGCCATCGATGCCGCCAAGGCTTACGACCGCGCCGCCTTTAAGCTCCGCGGCTCAAAAGCCATCCTCAACTTCCCTCTCGAAGCCGGCGCCGACAACAGGAAGCGCTCCCGTCAGGAGGACGACGAGAACAAGCAGGTCGTGAAGAAGGAGAAGGTGGAGGAATCATCGGACGTTAGTGGTATAAGGGATATTCCGTTAACGCCGTCTAGTTGGAGTGGGTTCTGGGACGGTGACGTAAGTGGTATTTTCAGTGTGCCGCCGTTATCGCCGTTATCTCCCCACCCAACGTTGGGATTTCCACAGCTTATGGTTGTGTGA 741 0.5277 MENPSELSALNLIKLHLLGELSSPLPHNSFSFQTNPTTSSSSSASVNSNEIVNALQRGKSPAEKKPHSTASSSNRKPSLQISLPKKTEWIQFGENSMNTTQQQKKKHHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIDAAKAYDRAAFKLRGSKAILNFPLEAGADNRKRSRQEDDENKQVVKKEKVEESSDVSGIRDIPLTPSSWSGFWDGDVSGIFSVPPLSPLSPHPTLGFPQLMVV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31010g00001 246 MobiDBLite consensus disorder prediction 173 201 - -
Stsc31010g00001 246 PANTHER DNA-BINDING DOMAIN 54 184 IPR044808 GO:0003700|GO:0009873
Stsc31010g00001 246 Gene3D AP2/ERF domain 107 168 IPR036955 GO:0003700|GO:0006355
Stsc31010g00001 246 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 MobiDBLite consensus disorder prediction 173 199 - -
Stsc31010g00001 246 MobiDBLite consensus disorder prediction 65 80 - -
Stsc31010g00001 246 MobiDBLite consensus disorder prediction 24 80 - -
Stsc31010g00001 246 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 FunFam Ethylene-responsive transcription factor 2 107 168 - -
Stsc31010g00001 246 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 PRINTS Ethylene responsive element binding protein signature 148 168 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Stsc31010g00001 246 MobiDBLite consensus disorder prediction 24 55 - -
Stsc31010g00001 246 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31010g00001 Stsc-Chr31010 176 1129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31010g00001 72 246 AP2-EREBP Transcription Factor Family AT5G47230 58.602 8.17e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc31010g00001 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31010g00001 K09286 - gmx:100808173 268.47