Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00039 ATGCACTCTTTCTTTCTTCTCTCTCTCTCTCTCTATCCGAATCAAGAATCACATAATCTTGTTCATCATCTTCTTCTCTTCGGTGTGATTAGTCCTTCCTCCACCGAGTCAGGAATCGGCATGACTCGGCGGTGCTCACACTGCAGCAACAATGGGCACAACACGAGGACATGCCCTAACCGTCCCGGAGGCGGAGGAGTGAAGCTCTTCGGTGTGAGGCTCACGGATGGATCAATCATAAAGAAGAGTGCCAGCATGGGCAATCTCATCACGCTTCACCACCATTCTTCTTCCTCCTTCCTCGCCGCTTCCGCCGCCGATAACCCACCGTCTCCTGACCCACTCGGTTACTTGTCCGATGACCCTGCCCACGCCTCCTCCTTCTCCAACCGCCGCGCCGAAAGAAAGAAAGGTGTTCCATGGACCGAAGAAGAACATCGGATGTTCTTAGTTGGTCTGCAAAAGCTGGGGAAAGGAGATTGGCGAGGAATAGCGCGGAATTTTGTTGTGTCAAGGACTCCTACTCAAGTAGCAAGTCATGCCCAAAAGTATTTTATCCGACAGAGTAATGCCAACAGGAGAAAGAGGCGTTCCAGCCTCTTCGACATGGCTCCAGATATGACCACGGATTCACCTTCGGTGCTGGAAAAACAAGTAGTGCTTCTGACTTCTGAGAACTCACAACCTTGTAATGCAAAATCACAACCTTCATTAGATCTATCTCTCAAATCTGAAGTTGACCCCATGGAAATTGCTTCTGAAGAACATGTGGAACAGAACAATGTAACTGTGATGGAATCTGCTGGTTCGAAACCAAAGGCTCCTGAATACTTCCCAAATTATGTACCTGTCCAATTTTCCATATGGCCATCACTTGCTGCTCCCTTACAAGAAAGTAATGGAGTAGAAACATCTCATCATGAGGTCCTGAAGCCGATTCCAGTCGTTCCCAAGAATCCGGTCAATGTTGATGCACTTGTGGGAATGTCTAATCTGAGCATTGGGAACACACAGAAGATTCTTGATAGGGAGCCTTCCCCACTTTCCCTGAAATTGTTAGGAGAGCCATCGAGGCAGTCAGCATTCCATGCAAAAGTTCATGCACCTGTCGGCCGCCGGTCGGACCTAAGTGGTGGCAAGAACACTCCAATCCAAGCAGTTTGA 1164 0.4871 MHSFFLLSLSLYPNQESHNLVHHLLLFGVISPSSTESGIGMTRRCSHCSNNGHNTRTCPNRPGGGGVKLFGVRLTDGSIIKKSASMGNLITLHHHSSSSFLAASAADNPPSPDPLGYLSDDPAHASSFSNRRAERKKGVPWTEEEHRMFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNANRRKRRSSLFDMAPDMTTDSPSVLEKQVVLLTSENSQPCNAKSQPSLDLSLKSEVDPMEIASEEHVEQNNVTVMESAGSKPKAPEYFPNYVPVQFSIWPSLAAPLQESNGVETSHHEVLKPIPVVPKNPVNVDALVGMSNLSIGNTQKILDREPSPLSLKLLGEPSRQSAFHAKVHAPVGRRSDLSGGKNTPIQAV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00039 387 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Stsc30g00039 387 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Stsc30g00039 387 SUPERFAMILY Homeodomain-like 135 190 IPR009057 -
Stsc30g00039 387 FunFam transcription factor MYB1R1 139 190 - -
Stsc30g00039 387 PANTHER TRANSCRIPTION FACTOR KUA1 43 315 - -
Stsc30g00039 387 SMART sant 137 187 IPR001005 -
Stsc30g00039 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Stsc30g00039 387 NCBIfam myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Stsc30g00039 387 Gene3D - 141 190 - -
Stsc30g00039 387 MobiDBLite consensus disorder prediction 364 387 - -
Stsc30g00039 387 CDD SANT 140 185 IPR001005 -
Stsc30g00039 387 MobiDBLite consensus disorder prediction 102 139 - -
Stsc30g00039 387 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00039 Stsc-Chr30 176114 178405 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30g00039 Myb_DNA-binding 6.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00039 - - gmx:778036 471.085