Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00035 ATGAGTTGTACTGACACAACCCGGGTTTGCACTTCTTTCTTGGCCTTCAAGCCTCAACAGTATCAAGCTTTACCTGTCATACAAAGCATGTTTGATGTGTTTCCCAGTGACATCACCCTTGAAGGCAATGGCTGGGACTACATATTCATCAGAAAGAACTGTTCTTGTGCTGCTAATACCAAGAACTATGTATCCAACACCACTTTCACAGTGAAATCAATTCATGGTGGCTTTGTCAATGACTTGGTGATGGATGCTTATGAGGGGCTTGCTCTCTTGCCTAACACCAATCATTGGGCAAGTAGTGGTTCTGTTGTATCACTGAGAGATGGGGATAGCGTTGAATCATTGGCGAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGGCAGTGAATGCCATTGACAATTCTGATAATGTCACTGTTGGTTCTCTGTTTTATATACCTCTCAATTCAATTCCTGGAAGGCCTTATCATTGGAACAATGACACTCCTCCAGTTCCTGTCCCTTCACCATCTTTTGATAATTTTTCAGCTGATCAAGTCAATCATAATGCTAATGTGGTCTCTGGATGGATCATTGGGGGCTTAATGGTTGGCATTGCTCTTATAATATTGAGCATTATTCTGTGTATTATTCTTACCCTAAGATCATCAAAATGTATTGCTGAAGCAAGACATCAAGAAAAAGATGATGATGATGAGGGAAAGGCATCTCAGAAATTGCATATTCTTAAGAAACCATGCTTCTTTTGTTGTTCTGGAGGGTACATGTGTGGGAAAAGTACTTTGGACCAGGAGCAAGATGATGGTGAATCCAGCAATCTCCAAATTACAGTCTCAAAACCTTCAACTATAGGACCTGACATATTTGGCATGGATAAGCCTATAGTTTTAACATGTGAAGAGATTTTTCACCCAACTAATGGTTTCTCTGATTCAAATTTGCTTGGACACAGAACATATGGTTCTGTTTACTATGGCCTACTTAGGGACCAGGAAGTTGCTATTAAGAGGATGAAAACTAGAAAAACTATAGAATCTATGATGACAGAATTGAAAGCTATGTGCAAGGTTCATCATGCTAATCTGGTAGAATTTATCGGCTATGCAACTAGTCATGATGATGAGATTTTCTTGATTTATGAATATGCTCAAAAGGGTTCACTCGGAAGCCATTTGCATGATCCTCAAAACAAGGGTCATTCGCCGCTTTCTTGGATCATGAGGGTTCAGATCGCGCTTGATGCTGCTAGGGGACTTGAATACATACATGAGCATACAAAAGCTCACTATGTTCATCAAGATATCACCACAAGCAACATTTTACTTGATGCTTCCTTTAGAGGCAAGATATCAGATTTTGGGATCACAAAACTTGTGGCGAAAGGAAACGATGGAGAAGCTGCAACAAGAAAAATTGCTACTTCATATGGATATCTTGCCCCAGAATACTTGAGAGACGGCCTTGCAACGACCAAAAGTGATGTCTACGCGTTTGGAGTTGTTCTTTTCGAGATCATATCAGGAAAGGAGGCCGTCATTCGAACTGAAGGCGTGGCAACAAACAATCCTGAAAGACGTTCACTGGCATCTGTTATGGTGTCCATTCTCAGGAGCACGTCAAGCCTGAGAGACAACATTGATCCTAATATGATGAATCTGTATCCTTATGATAGTGTATCTAAGATGGCCATGCTTGCAAAACAATGTGTGGAGGATGAACCCATCTTACGACCTGATATGAAGCAAGTTGTAATGTCCCTCTCACAGATCCTCCTCTCTTCTGCTGAATGGGAAGCAACTCTAGCAGGGAAAAGCCAGGTTTTCAGTGGCCTTATTCTGGGGAGATAG 1854 0.4137 MSCTDTTRVCTSFLAFKPQQYQALPVIQSMFDVFPSDITLEGNGWDYIFIRKNCSCAANTKNYVSNTTFTVKSIHGGFVNDLVMDAYEGLALLPNTNHWASSGSVVSLRDGDSVESLASRFGVSMDSIEAVNAIDNSDNVTVGSLFYIPLNSIPGRPYHWNNDTPPVPVPSPSFDNFSADQVNHNANVVSGWIIGGLMVGIALIILSIILCIILTLRSSKCIAEARHQEKDDDDEGKASQKLHILKKPCFFCCSGGYMCGKSTLDQEQDDGESSNLQITVSKPSTIGPDIFGMDKPIVLTCEEIFHPTNGFSDSNLLGHRTYGSVYYGLLRDQEVAIKRMKTRKTIESMMTELKAMCKVHHANLVEFIGYATSHDDEIFLIYEYAQKGSLGSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHQDITTSNILLDASFRGKISDFGITKLVAKGNDGEAATRKIATSYGYLAPEYLRDGLATTKSDVYAFGVVLFEIISGKEAVIRTEGVATNNPERRSLASVMVSILRSTSSLRDNIDPNMMNLYPYDSVSKMAMLAKQCVEDEPILRPDMKQVVMSLSQILLSSAEWEATLAGKSQVFSGLILGR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00035 617 FunFam PTI1-like tyrosine-protein kinase 3 385 603 - -
Stsc30g00035 617 ProSiteProfiles Protein kinase domain profile. 311 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30g00035 617 Pfam LysM domain 110 149 IPR018392 -
Stsc30g00035 617 Pfam Protein tyrosine and serine/threonine kinase 315 589 IPR001245 GO:0004672|GO:0006468
Stsc30g00035 617 SMART LysM_2 105 149 IPR018392 -
Stsc30g00035 617 Gene3D Transferase(Phosphotransferase) domain 1 386 607 - -
Stsc30g00035 617 Gene3D Phosphorylase Kinase; domain 1 280 384 - -
Stsc30g00035 617 ProSiteProfiles LysM domain profile. 104 148 IPR018392 -
Stsc30g00035 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 107 611 IPR044812 GO:0019199|GO:0045087
Stsc30g00035 617 SUPERFAMILY Protein kinase-like (PK-like) 290 589 IPR011009 -
Stsc30g00035 617 SUPERFAMILY LysM domain 109 149 IPR036779 -
Stsc30g00035 617 ProSitePatterns Tyrosine protein kinases specific active-site signature. 432 444 IPR008266 GO:0004672|GO:0006468
Stsc30g00035 617 Gene3D LysM domain 98 154 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00035 Stsc-Chr30 157011 159847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00035 1 617 Receptor kinase-like Gene Family AT1G51940 56.308 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc30g00035 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00035 - - gmx:100796989 873.233