Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00032 ATGGATGAAAGATCAAGAAATGAAGTATCTCCTCCTCATCACCATCTCATGAAACTTGAACTCAGGCTTGCTCCACCTGGTGCTGATGAACAACAACAACACTGGTCAAGAACAACAACAAAGAGACATGATGACTCTTCTTCTGTGCTATCTCTTGGTTACTTCCCTCATCATCATGCAACCATTAAAGCTTCTCCTTCTCCTTCTTCTTCTCCACAACAAGCACCACTACCGTTGCAGAATAATAATAATAATAATAATAATAATAATAATGCAGACAAGAAAGTTTTCTCACCCTCTTCTGCAAACACAGCTGTTCCCAACATTTCTCAGAAAAGAACTGCTCCAGGTCCAGTAGTGGGTTGGCCACCAATCCGTTCATTCAGGAAGAACCTTGCAAGTAGCAGTTCTTCAAAGCCACCTCCTCCTCCTCCTGAGCACCATAACAAGGTGGTGCCTGCTGCTGCTGCTTTGGACAAGAACAACAACAGCTATGGTGGGAAAGGCATGTTTGTGAAGATCAACATGGATGGTGTTCCCATTGGTAGGAAAGTTGACCTCAATGCTTATGATAGCTATGAAAATCTCTCCAATGCTGTGGACCAACTCTTCAGAGGCCTTCTTGCTGCTCAAAGAGATAATTCTTCTGGTGGTAGTGGAGTTAACAAGCTACAAGAGGAAGAGAAAGTGATAACAGGATTATTAGATGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCCTGGCACATGTTCGTATCAACAGTGAAGAGGCTGAGAGTGTTGAAGAGTTCTGAGCTTTCTGCCTTTACCCTTGGTGGTAATAAGCAAGACAAAGATGCAACTTGA 882 0.4297 MDERSRNEVSPPHHHLMKLELRLAPPGADEQQQHWSRTTTKRHDDSSSVLSLGYFPHHHATIKASPSPSSSPQQAPLPLQNNNNNNNNNNNADKKVFSPSSANTAVPNISQKRTAPGPVVGWPPIRSFRKNLASSSSSKPPPPPPEHHNKVVPAAAALDKNNNSYGGKGMFVKINMDGVPIGRKVDLNAYDSYENLSNAVDQLFRGLLAAQRDNSSGGSGVNKLQEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGGNKQDKDAT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00032 293 Gene3D - 165 286 - -
Stsc30g00032 293 MobiDBLite consensus disorder prediction 63 111 - -
Stsc30g00032 293 SUPERFAMILY CAD & PB1 domains 162 272 - -
Stsc30g00032 293 FunFam Auxin-responsive protein 164 287 - -
Stsc30g00032 293 Pfam AUX/IAA family 19 280 IPR033389 -
Stsc30g00032 293 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 278 IPR003311 GO:0005634|GO:0006355
Stsc30g00032 293 MobiDBLite consensus disorder prediction 22 150 - -
Stsc30g00032 293 ProSiteProfiles PB1 domain profile. 169 275 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00032 Stsc-Chr30 131911 135197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00032 173 284 B3 DNA Binding Superfamily AT4G23980 33.929 1.89e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30g00032 AUX_IAA 2.8e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00032 K14484 - gmx:100804593 303.908