Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00031 ATGGGAAAAGCTAGCAGGTGGTTGAAGAGGTTATTGGGAATGAAGAAGGAGAAGGACAACTATGACAATTCTGCCTCAATGGCTGCTCCTTCTACTGACAAGAAGGAGAAGAAACGTTGGAGCTTTGCAAAGTCTGCAAAAGATGGAGACTCTGCTGATGCTAGGATCAGATCTTATGCTGCTGAGAAAGGGAATGAGCAGAAGAAGAATGCCATTGCCGTGGCGGCCGCCACTGCAGCCGCTGCGGAATCTGCCGTGGTAGCAGCTAATGCTGCCATGGAAGTTGTGAGACTAACAAGCCATGGAAGAGGAACATTGTTTAGTGGAAGCATGGAGAGATGTGCTGCATTGAAGATCCAATCTTATTTTAGAGGTTACTTGGCTAGGAGGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTAGTTAGAGGCTATCTGGTTAGGAAAAGAGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAGGTCGCAGCGAGAGCTCGCCGTTTCGTTAGCAATGCCAATAGATTTCAATCCCAAACCCCTGCAAGAAGATATGTGCAATGGTATGATGAAACAAGAAGTGAGTTTCACAGTAAAAGGCTACCGACAAGAAGCAAATCTTATGAAACATCCTTAATAAATATGAAAGGATTTGATGAGAGCCCCAAAAATGTTGAAATTGATACATACAAGCCTCAATCAAGATCAAGAAGGATCACAACAACTGTATCTGAGACTGAAGAAGAAGATCACATGCACTATCAAGCAATCTCAGTTCTTGAATGCAGCAGGCATCCTCCTCCTCCTCCTCCTCAGCATTTGGAATGGTACTTGAACACCGGCGAATGTGATATCGCGACAGCTCACAGCACGCCTCGACTGGTAAACGCTCCGGCTACTCCGGTGAAGAGTGTTTGTGGAGACTCCTTTAGGCCTTACTGCAATTCCCCTAACTATATGGCCAATACTCAGTCATATAGGGCAAAGGTTAGGTCTCATAGTGCTCCAAAGCAAAGGCCTGAGCCTAAGAAGAGGTTTTCACTCACTGAATTAATGGCAGCAAGAAATAGCACTAGTGGTGTTAGAATGCATTGGTCATCCAAATCACAGTCTCAAGATTTTTGCAGTTTTGACAGAGTTGAGAGGAAATTGAGATAG 1179 0.4487 MGKASRWLKRLLGMKKEKDNYDNSASMAAPSTDKKEKKRWSFAKSAKDGDSADARIRSYAAEKGNEQKKNAIAVAAATAAAAESAVVAANAAMEVVRLTSHGRGTLFSGSMERCAALKIQSYFRGYLARRALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQVAARARRFVSNANRFQSQTPARRYVQWYDETRSEFHSKRLPTRSKSYETSLINMKGFDESPKNVEIDTYKPQSRSRRITTTVSETEEEDHMHYQAISVLECSRHPPPPPPQHLEWYLNTGECDIATAHSTPRLVNAPATPVKSVCGDSFRPYCNSPNYMANTQSYRAKVRSHSAPKQRPEPKKRFSLTELMAARNSTSGVRMHWSSKSQSQDFCSFDRVERKLR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00031 392 MobiDBLite consensus disorder prediction 364 381 - -
Stsc30g00031 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 154 IPR027417 -
Stsc30g00031 392 MobiDBLite consensus disorder prediction 364 392 - -
Stsc30g00031 392 MobiDBLite consensus disorder prediction 19 51 - -
Stsc30g00031 392 SMART iq_5 134 155 IPR000048 GO:0005515
Stsc30g00031 392 SMART iq_5 111 133 IPR000048 GO:0005515
Stsc30g00031 392 Gene3D - 112 154 - -
Stsc30g00031 392 PANTHER IQ-DOMAIN 5-RELATED 1 363 - -
Stsc30g00031 392 MobiDBLite consensus disorder prediction 31 51 - -
Stsc30g00031 392 Pfam IQ calmodulin-binding motif 139 153 IPR000048 GO:0005515
Stsc30g00031 392 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515
Stsc30g00031 392 Pfam Protein of unknown function (DUF4005) 299 367 IPR025064 -
Stsc30g00031 392 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Stsc30g00031 392 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00031 Stsc-Chr30 125338 126810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00031 1 370 IQD Protein Family AT3G16490 50.390 3.04e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00031 - - gmx:100797686 390.193