Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00023 ATGTCCACCTCTACTGATTCGGTGATGACAGACATACAATATATTTCAGATGCGGATTTCATAAGAAGTGGTGTACCTAAAACAGTGAAATCTGACTTCACGAGTTACTTTAAACAAGAGCAACTTTGGACTCTGAGAAGCTTCCCGAACGGAACAAGAAACTGCTACAAGATAAACAGCATCACAATGGGCTCCAAATATCTGATCCGCCTTCAGTTCGCATATGGAAACTACGACGGGCTTAACAGTTTTCCACAGTTTGATGTGTTTCTTGGAGTTAACAGGTGGGATACAGTAATAGGCATGCGATCCGACGGGTACAGGTACATAGAGATGATACATAGAGCTTCACAGGAATACGTAAATATCTGTTTGGTGAATATAGACCTTGGCACGCCATTCATTTCAACCATAGATTTCAGGCCTTTGAAAAATGATACCTATCTTGCTCCATCTCATGGATCACTCTTTACTTACCACCATGTCAATTTAGGTTTACCATCCGCCAACTACACATACAGGTACAAGGACGATCTGTATGATCGTTTCTGGACAACGTTCACGCGACTTGAATGGGTAACATTGAATAGTACTATAAGAGCTGATGATGGCTTTAGCCAGAACGATTACGAGTTGCCAGAAGATGTCATGAGCACGGCGATAACACCGGCAAATGCAAGTGATCCCTTGGTGATAAATTGGGCGGCGCCATCGGATCAAATTGGTGATGAATACTATATATACATGCACTTCATGGAGGTTGATGAGTTGAACAAAAACCAAACAAGGGAATTTAACATCTATGTGGACGGTAAGTCATTCTATGAAAACCTCGCGCCGCCCTACCTCTCTACCAAAACACTCGCCGTAGTCTCCAACGCAATTAGTTTTTCGTTTTACAAGACGCCGCGTTCAACCCTGCCTCCCATCATCAACGCCATTGAAGTTTACGGCTTAATTCAATTCCACCAATCAGATACATTCCAACCAGATGTTGATGCAATAACAAGGATCCAGTCAGTTTATAGTTTGACAAGAGATGAGTGGCAAGGGGATCCCTGTGGCCCTGAAGGCTACACGTGGCAGTGGGACGGTCTCAATTGTACTCGTCATCTAAATGAATCCCCTCGGATTACTGCCCTGAATTTATCAGGTAGTGGATTGACGGGAACTATAGATCTTTCCTTTTCAAACCTCACCATGTTGGAAAAGTTGGATTTATCAAACAACAAGTTGAATGGCCGCGTTCCGGATTTTCTCTCTCAATTACCTAAGTTACAGATCTTGAACTTGGCAGGCAATAACCTCAGTGGTTCACTACCATCAATCCTAGTTCAGAAATCTAACAAAGGTTTCTTGTTACTCAATGTTGATCAAAATCCATATCTATGTGAATCTGGTGGAGAGTGCAAAGTAGAAAAGAAGAAGAAAAAGAAGACAAAGCCATTTTTAGTAGCCGAAGCTATTGGGATTTCAGCGGTGGCTGTACTGGCGGCGGTGGCCGCCGCAGCTGTAGTCTGGACCCTCCTGAAAAGGAGAAAAAGCAAAGGAGATAAAAAGACTCCAAGAAGGGAGATCAAGCAAGACGATGACGTATCACTCAATAAGTTCAAGAATAAAATCTATTCATACTCTGACATCCTTAAATTCACCAACAACTTGGGACAAATCCTTGGTAAAGGTGGGTTTGGAACAGTTTATATGGGATATATTCATGACACTCCAGTTGCTGTGAAGATGCTTTCTCCATCCTCTATTCAAGGTTATCAGCAATTCCAAGCAGAGGTTAAGCTTCTAATGAGAGTTCATCATAGAAATTTGACCTCCCTTGTTGGATATTGTAACGAAGGAACCAATAAGGCTCTCATATACGAGTATATGGCCAATGGAAATCTACATCAACATCTCTCAGCAGGTACCAAATTCCTGAGCTGGAAAGACAGGCTCTGTATAGCAGTAGATGCAGCCCAAGGGTTGGAGTATTTACACAATGGTTGCAAGCCACCTATAATCCACAGAGACGTAAAAGCTTCAAACATTTTGTTGACTGAAAACTTGCATGCAAAATTATCTGATTTTGGTTTGTCAAAGATTATCCCAACGGATGGGGGCAGTCATGTTTCAACTGTCGTAGCCGGTACGGCCGGCTACTTGGATCCCAATTACTACCAAACAAGCAGATTGACAGAGAAGAGTGATGTTTACAGTTTTGGAGTTGTTCTTTTGGAGTTAATCACAAGTCAAGCAGCAATAAGAATGTCAGAAGATGATGAGAAAGCTCACTTGAGTCATTGGGTTGATTCGATGGTTGGGAGAGGGGATATCCATGGCATTGTTGACTCAAGATTAGGGGGAGACTTTGACTGTAGCTCTGCCTGGAAAGTTGTGGAAACAGCAATGGCTTGTGTGTCTCAAAGCTCTAATGAAAGGCCAATCATGATTGAGGTTTTGATTGAACTGAAGAATGCTTTAGCAATGGAATTAAGTCGAACAAAATATGGTGGTGGTGTCAACAAAAATAATGATGGAGATTCTTATTCATCTCTTGAACTGCTCTCTGTGAATGTAGAAAATGAATCCATTCCTCAGGTCAGGTAA 2598 0.4203 MSTSTDSVMTDIQYISDADFIRSGVPKTVKSDFTSYFKQEQLWTLRSFPNGTRNCYKINSITMGSKYLIRLQFAYGNYDGLNSFPQFDVFLGVNRWDTVIGMRSDGYRYIEMIHRASQEYVNICLVNIDLGTPFISTIDFRPLKNDTYLAPSHGSLFTYHHVNLGLPSANYTYRYKDDLYDRFWTTFTRLEWVTLNSTIRADDGFSQNDYELPEDVMSTAITPANASDPLVINWAAPSDQIGDEYYIYMHFMEVDELNKNQTREFNIYVDGKSFYENLAPPYLSTKTLAVVSNAISFSFYKTPRSTLPPIINAIEVYGLIQFHQSDTFQPDVDAITRIQSVYSLTRDEWQGDPCGPEGYTWQWDGLNCTRHLNESPRITALNLSGSGLTGTIDLSFSNLTMLEKLDLSNNKLNGRVPDFLSQLPKLQILNLAGNNLSGSLPSILVQKSNKGFLLLNVDQNPYLCESGGECKVEKKKKKKTKPFLVAEAIGISAVAVLAAVAAAAVVWTLLKRRKSKGDKKTPRREIKQDDDVSLNKFKNKIYSYSDILKFTNNLGQILGKGGFGTVYMGYIHDTPVAVKMLSPSSIQGYQQFQAEVKLLMRVHHRNLTSLVGYCNEGTNKALIYEYMANGNLHQHLSAGTKFLSWKDRLCIAVDAAQGLEYLHNGCKPPIIHRDVKASNILLTENLHAKLSDFGLSKIIPTDGGSHVSTVVAGTAGYLDPNYYQTSRLTEKSDVYSFGVVLLELITSQAAIRMSEDDEKAHLSHWVDSMVGRGDIHGIVDSRLGGDFDCSSAWKVVETAMACVSQSSNERPIMIEVLIELKNALAMELSRTKYGGGVNKNNDGDSYSSLELLSVNVENESIPQVR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00023 865 SMART serkin_6 552 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30g00023 865 SUPERFAMILY L domain-like 348 446 - -
Stsc30g00023 865 FunFam Leucine-rich repeat receptor-like protein kinase 527 626 - -
Stsc30g00023 865 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 627 833 - -
Stsc30g00023 865 Pfam Malectin-like domain 9 317 IPR024788 -
Stsc30g00023 865 Gene3D - 158 319 - -
Stsc30g00023 865 Pfam Leucine rich repeat 376 436 IPR001611 GO:0005515
Stsc30g00023 865 CDD STKc_IRAK 558 822 - -
Stsc30g00023 865 SUPERFAMILY Protein kinase-like (PK-like) 537 819 IPR011009 -
Stsc30g00023 865 ProSiteProfiles Protein kinase domain profile. 552 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30g00023 865 Pfam Protein tyrosine and serine/threonine kinase 554 748 IPR001245 GO:0004672|GO:0006468
Stsc30g00023 865 Gene3D Ribonuclease Inhibitor 334 452 IPR032675 -
Stsc30g00023 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 670 682 IPR008271 GO:0004672|GO:0006468
Stsc30g00023 865 ProSitePatterns Protein kinases ATP-binding region signature. 558 579 IPR017441 GO:0005524
Stsc30g00023 865 Gene3D Phosphorylase Kinase; domain 1 558 627 - -
Stsc30g00023 865 FunFam Leucine-rich repeat receptor-like kinase 330 466 - -
Stsc30g00023 865 Gene3D Transferase(Phosphotransferase) domain 1 628 835 - -
Stsc30g00023 865 PRINTS Leucine-rich repeat signature 402 415 - -
Stsc30g00023 865 PRINTS Leucine-rich repeat signature 423 436 - -
Stsc30g00023 865 PANTHER OS07G0107800 PROTEIN-RELATED 5 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00023 Stsc-Chr30 94341 98973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00023 10 865 Receptor kinase-like Gene Family AT2G19210 46.127 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc30g00023 Malectin_like 1.4e-93 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00023 - - adu:107492765 1254.97