Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00021 ATGGTCCACCACCACCAACACCAACAACTCATCAACAGCACAACACAGAATAATAACAACAACAACAACAATAATGGCTCATCATCATCATCATCCCTTGAATCACTGGATTGCTTGCTTTCTGCTACCAACAGCAACACAGACACTACTACTGCTACTTCTCTTGATGAAGATGATGGCATCTCCATCATTCTATCTGACTGCAGAAGAAACTTCTGGAACTTCACCACTAATTATGGAGCCATCACTGCTTCCTCTGCTGAATCTGAAACCAATAATGCTTCTATCAGAAACAATAACATGCACTATCATCATCATGATAATGAAACAGTATCTCAAAATTCAAAGAGGACCATTATCAATGACCACCAATATGATCATCACCTTATCAAATCTTCTTCTGCTGCTGCTGCTGCTGCAACCACCAATGCTCCCTCCTACTTCAGTATCTTTCACAGTAATAACTCTCCTTCCTCCACTGAAAGCGGCGGTTTCAAGCTTATTCAAGAGAATAATCCTCCTCCACCAAGATCCAAGAAACCAAGATGTGGTGGTAGTTCATCCAACATCAACTTCCAGCAACCTAATTCATCACATTCCACCATTGAAGAGCCTGATCCAGAGGCCATAGCACAGATGAAGGAGATGATATACAGAGCTGCAGCATTCAGGCCTGTGAACTTGGGAATGGAGGTTGCAGAGAAGCCAAAGAGGAAGAATGTGAAGATATCAACTGATCCTCAAACAGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGAAAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCTAACTACCTCAAGTTTCTTAGATCACAAGTCAAAGCTCTTGAAACCTTAGAGAACAAGCTTCATCATGTTCCTCCTCCTCCTACCACCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATTCCAACCACCTCCTATTTTCCCCCACCATAA 1008 0.4266 MVHHHQHQQLINSTTQNNNNNNNNNGSSSSSSLESLDCLLSATNSNTDTTTATSLDEDDGISIILSDCRRNFWNFTTNYGAITASSAESETNNASIRNNNMHYHHHDNETVSQNSKRTIINDHQYDHHLIKSSSAAAAAATTNAPSYFSIFHSNNSPSSTESGGFKLIQENNPPPPRSKKPRCGGSSSNINFQQPNSSHSTIEEPDPEAIAQMKEMIYRAAAFRPVNLGMEVAEKPKRKNVKISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALETLENKLHHVPPPPTTIAFSFNPSFPIPTTSYFPPP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00021 335 Coils Coil 282 302 - -
Stsc30g00021 335 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 48 322 IPR045843 GO:0003700|GO:0006355
Stsc30g00021 335 MobiDBLite consensus disorder prediction 159 203 - -
Stsc30g00021 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 310 IPR036638 GO:0046983
Stsc30g00021 335 Pfam Helix-loop-helix DNA-binding domain 253 292 IPR011598 GO:0046983
Stsc30g00021 335 MobiDBLite consensus disorder prediction 1 33 - -
Stsc30g00021 335 MobiDBLite consensus disorder prediction 182 203 - -
Stsc30g00021 335 Gene3D - 248 309 IPR036638 GO:0046983
Stsc30g00021 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Stsc30g00021 335 FunFam BHLH transcription factor 246 309 - -
Stsc30g00021 335 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00021 Stsc-Chr30 83822 84968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00021 35 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.495 1.43e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30g00021 HLH 8.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00021 - - aip:107612801 410.609