Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00014 ATGACCACCGTACCGGGACAATTGGTTTGGGAGATCGTGAAGAAGAACAACTGCTTCTTGGTTAAGCAGTTTGGAAGGGGCACTCAGAGCGTTGAGTTCAGTAGAGAAGCCAACAATCTCTACAATCTCAACTCCTTCAAGTACTCCGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCTGCTGGAAAGGATCAGTCTGTGTTGCTTGCTACAACAAAGACAAAGAAGCAAAACAAGCCTTCTGCATTGCTTCACAAATCTGTCATGAAGAAGGAGTTCCCTAGAATGGCAAAAGCAGTGAAAAAACAGGTTGCAGCTAACCACTACAGGCCTGATCTCACGAATGCAGCTCTTGCAAGGTTGAGTATTGTCAATAGGAGCCTGAGGGTTGCAAAGTCTGGTGTCAAGAAGAGAAACAGACAGGCTGTGAGGGTCCATGGTAGGAAGTGA 453 0.457 MTTVPGQLVWEIVKKNNCFLVKQFGRGTQSVEFSREANNLYNLNSFKYSGLANKKTVTIQPAGKDQSVLLATTKTKKQNKPSALLHKSVMKKEFPRMAKAVKKQVAANHYRPDLTNAALARLSIVNRSLRVAKSGVKKRNRQAVRVHGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00014 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Stsc30g00014 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Stsc30g00014 150 FunFam 60S ribosomal protein L28 5 133 - -
Stsc30g00014 150 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00014 Stsc-Chr30 60133 61747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00014 1 143 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 72.028 3.63e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00014 K02903 - gmx:100499963 256.144