Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00010 ATGCAAGACCCAACAACAGTGTTTCAACCCATCAAACCCCAATTTCCAGAACAAGAACAGCTTAAATGCCCTCGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGTAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTCTTAGGAACATCCCAGTTGGTGGTGGAAGCAGGAAGAACACAAAGAAATCATCCACCACCACCAACAACAACAACTCCAAAAGGCCTGCATCATCTGCAGCACCATCATCATCATCAGTATCAGTATCCCCTTCACCATCAGTTTCCACTCCAGCACAGGCTGCTTCGTCCGGTCCAGAACCCGACTCGGCCCAGGTTTATGCTGCCCCGCCGGCCGTGGCTGATCAAGGCCAACAAAGGGTGCTTGACATTGGTGGAAGCTTCAGTTCCTTATTGGCATCAACTAGCCATTTGGGAAGCCTATTGGAGGGTCTGAATTCAAGTGGATCAAGTCTTAAAATGGTGCAAATGAACGAATTCGGGGTGAATTCGGGCGGTTCTGGCGTGCCGCCCGTGAGCTCGAATTCTAGTAGAAATCCAGGGTTGGATGTTCAGAGCAGTGGCAATAATGCAGAGAGCTTCCTGAGTATGCATAATGGTGATTCAAGCTGTTGGAATAATGGTAGCAATGGATGGTCTAATCTTGCAATATTTACACCAGGATCAAGCTTTCAGTAG 738 0.477 MQDPTTVFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKKSSTTTNNNNSKRPASSAAPSSSSVSVSPSPSVSTPAQAASSGPEPDSAQVYAAPPAVADQGQQRVLDIGGSFSSLLASTSHLGSLLEGLNSSGSSLKMVQMNEFGVNSGGSGVPPVSSNSSRNPGLDVQSSGNNAESFLSMHNGDSSCWNNGSNGWSNLAIFTPGSSFQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00010 245 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Stsc30g00010 245 MobiDBLite consensus disorder prediction 70 120 - -
Stsc30g00010 245 MobiDBLite consensus disorder prediction 62 125 - -
Stsc30g00010 245 MobiDBLite consensus disorder prediction 183 213 - -
Stsc30g00010 245 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Stsc30g00010 245 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Stsc30g00010 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 197 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00010 Stsc-Chr30 46862 48592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00010 12 162 C2C2-Dof Transcription Factor Family AT1G51700 52.318 7.00e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30g00010 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00010 - - gmx:100798927 245.358