Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00005 ATGAGTAGAGAACAGCATAAGAGAGGGAAGCAAGAAAAAGGTTCAGATGGTACTTCTGAGAAGGTTATTGTTGCTGTGAAAGCATCAAAGGAAATTCCAAAGGCAGCACTTGTTTGGTCTCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTAATAGTGGTTGTGCCTTCACAAAGTTTTGGTAGAAGATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAACACTCACAAGAAACCTCCTCCACCAACTAGTTCAGAGCAGAAGAGTGATATTACTGATTCTTGCTCTCAGATGATTCTTCAGCTCCATGACATCTATGATCCAAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCATGTGGAGCAGTTGCTGCAGAAGCCAGAAAGGCACAAGCCAATTGGGTTGTATTAGACAAGCAGCTAAAACAAGAGGAAAAGCAGTGCATGGAAGAGCTTCATTGCAACATTGTTGTTATGAAACAATCCCAACCAAAAGTGCTCCGTTTGAATTTAATTGGATCACAAAAGAAGGATCTTGAAGAAGCAGCTCCATTATGTTCCAAGCAAGATGGGAAGCTTGGAAGACAAGCCAATAATAAGAATGATTCTTTGAGTTCCATGAAAGGAGCAGCTGTCACCCCAACTAGTAGTCCAGATGTAGAGACTCCTTTTACCGCGACTGAAGCCGGTGCTTCATCCGTTTCGAGCTCTGATCCTGGAACTTCACCATTCTTTGTTTCTCAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATCAAGGAAAATCAAGAAGTTGATACTAGTTCAGACTCAGACAGTGAAAAGTTTTCCACATCCTCAGCAAGCTTGAGATTCCAACCATGGATCAGAGATTTACTTTTATGTAAGCAATCATCTCAATGCAGAGAAGAAGGAGGATGTCACAGCAAGAATAATCAAACATCCACAGCTAGAGCTTTGTTGGAGAAGTTCTCAAGGCTAGACAGAGAAGCTGAAATGGAGATCTCAAGCCATCATGTGAGTGAGTTGGATTTGAGTGGAAATGTAAGAGAAGCAATAGCATTATCAAGAAATGCTCCACCTGGTCCACCTCCATTGTGTTCAATATGTCAACACAAGGCTCCTGTTTTTGGGAAACCTCCAAGGTGGTTCAGCTATGCCGAGTTGGAACTCGCTACTAGTGGATTCTCTCAAGCTAATTTCTTAGCAGAAGGGGGATTTGGCTCAGTTCACAGAGGGGTCTTACCTGATGGACAAGTCATTGCTGTGAAGCAGCATAAACTGGCTAGCTCTCAGGGTGATGTTGAATTTTGCTCAGAGGTTGAAGATAAGAGAAGGCTGCTGGTTTATGAGTTCATATGCAATGGATCTCTGGACACTCACTTATATGGGAGAAAACAGAAACCATTAGAATGGTCAGCACGTCAAAAGATTGCTGTAGGAGCTGCTAGAGGCTTGAGATATCTTCATGAGGAGTGCAGAGTAGGCTGCATTATCCACCGCGACATGCGGCCGAATAACATTCTTATCACACATGATTTTGAGCCACTGGTTGGTGATTTTGGACTAGCAAGGTGGCAACCACATAGAGACACTGGTGTGGAAACAAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACAGAAAAGGCTGATGTTTACTCCTTTGGGGTGGTTTTGGTGGAGCTTGTCACCGGACGAAAAGCTGTCGATCTTAGTAGGCCAAAGGGGCAGCAATGCCTTACTGAATGGGCACGGCCATTGCTAGCAGAATATGCAATTGAGGAACTAATTGATCCAAGGTTGGGAAATCAGTATGCAGAACATGAGGTCTATTGCATGCTTCATGCAGCTTCATTATGCATAAGGAGAGATCCTAATTCTAGACCTCGCATGTCACAGGTTCTCAGAATACTGGAGGGTGACATGATCATGGACACAAATAAATAA 1995 0.4301 MSREQHKRGKQEKGSDGTSEKVIVAVKASKEIPKAALVWSLTHVVQPGDCITLIVVVPSQSFGRRLWGFPRFAGDCANTHKKPPPPTSSEQKSDITDSCSQMILQLHDIYDPNKINVKIKIVSGSPCGAVAAEARKAQANWVVLDKQLKQEEKQCMEELHCNIVVMKQSQPKVLRLNLIGSQKKDLEEAAPLCSKQDGKLGRQANNKNDSLSSMKGAAVTPTSSPDVETPFTATEAGASSVSSSDPGTSPFFVSQMNGESKKEETIKENQEVDTSSDSDSEKFSTSSASLRFQPWIRDLLLCKQSSQCREEGGCHSKNNQTSTARALLEKFSRLDREAEMEISSHHVSELDLSGNVREAIALSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATSGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDVEFCSEVEDKRRLLVYEFICNGSLDTHLYGRKQKPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPHRDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLSRPKGQQCLTEWARPLLAEYAIEELIDPRLGNQYAEHEVYCMLHAASLCIRRDPNSRPRMSQVLRILEGDMIMDTNK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00005 664 CDD USP_Like 21 181 - -
Stsc30g00005 664 MobiDBLite consensus disorder prediction 199 259 - -
Stsc30g00005 664 ProSiteProfiles Protein kinase domain profile. 403 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30g00005 664 Gene3D HUPs 4 186 IPR014729 -
Stsc30g00005 664 Gene3D Transferase(Phosphotransferase) domain 1 460 663 - -
Stsc30g00005 664 MobiDBLite consensus disorder prediction 191 285 - -
Stsc30g00005 664 SUPERFAMILY Protein kinase-like (PK-like) 387 654 IPR011009 -
Stsc30g00005 664 MobiDBLite consensus disorder prediction 260 278 - -
Stsc30g00005 664 ProSitePatterns Tyrosine protein kinases specific active-site signature. 505 517 IPR008266 GO:0004672|GO:0006468
Stsc30g00005 664 FunFam Dual-specific kinase DSK1-like 13 167 - -
Stsc30g00005 664 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 460 663 - -
Stsc30g00005 664 Pfam Protein kinase domain 449 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30g00005 664 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 454 - -
Stsc30g00005 664 PANTHER OS01G0750732 PROTEIN 156 659 - -
Stsc30g00005 664 Gene3D Phosphorylase Kinase; domain 1 375 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00005 Stsc-Chr30 16396 19759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00005 342 650 Trihelix Transcription Factor Family AT1G68690 47.917 6.49e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc30g00005 Pkinase 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00005 - - gmx:100789216 1083.94