Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00004 ATGGGAACAGAAGCAATGCCCTATATAAGCTCCCAAATTGACTATCAAGATTCTTCTGATGAAAATGGTGCTGGCGGACGTCCTAGAGCAATTGCGATGGATTGTGAAATGGTTGGTGGTGGGAGTGATGGAACGCTGGAAATTTGTGCAAGAGTATGCTTGGTTGATGAAGATGAGAATTTAATCTTCCACACATATGTACAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACCGAAGAGAATCTTAGACATGCTATGCCACTGAAGGAAGTTCAGGAGAAGATATTACAAATTCTATACAATGGAGAATCCATTGGCGGAGTTCTACGTGGGGGGAAGGCCAGGCTTCTTGTGGGGCATGACTTAGAACATGATTTAGATAGCTTGAAAATGAATTATCCCGAACACTTGATGAGGGACACTGCAAAGTATCGACCATTGATGAAGACAAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAGAGCGGCGCTCATGATCCATATGAAGACTGTGTTTCTGCGATGAGACTTTATGAGAGAATTCGAGGTCAAATTCACAAGGAGGAACACTATGGAACATTGACTTCCAATAAAAACAGCATAGGCAAGTCAAATTGTTGGCAATCCGAAGAAGTAAAGAACCTCACACCTGATGAACTATATGGCATGTCGAAATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAACTTGGCACCCTGA 771 0.4189 MGTEAMPYISSQIDYQDSSDENGAGGRPRAIAMDCEMVGGGSDGTLEICARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEENLRHAMPLKEVQEKILQILYNGESIGGVLRGGKARLLVGHDLEHDLDSLKMNYPEHLMRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCVSAMRLYERIRGQIHKEEHYGTLTSNKNSIGKSNCWQSEEVKNLTPDELYGMSKSDYRCWCLDLRPNLAP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00004 256 SMART exoiiiendus 29 202 IPR013520 -
Stsc30g00004 256 Pfam Exonuclease 31 193 IPR013520 -
Stsc30g00004 256 MobiDBLite consensus disorder prediction 1 27 - -
Stsc30g00004 256 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 201 IPR047021 GO:0004527
Stsc30g00004 256 MobiDBLite consensus disorder prediction 1 19 - -
Stsc30g00004 256 CDD REX4_like 31 193 IPR037431 GO:0006364|GO:0008408
Stsc30g00004 256 Gene3D - 26 214 IPR036397 GO:0003676
Stsc30g00004 256 SUPERFAMILY Ribonuclease H-like 30 196 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00004 Stsc-Chr30 11821 15129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00004 11 249 C2H2 Transcription Factor Family AT3G27970 54.583 4.68e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00004 K18327 - gmx:100805841 405.601